Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HSPG2P98160 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
HSPG2P98160 RNU1-112P-201ENST00000364401 164 ntBASIC1.75□□□□□ -2.13
HSPG2P98160 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC1.75□□□□□ -2.13
HSPG2P98160 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC1.75□□□□□ -2.13
HSPG2P98160 OR5H5P-201ENST00000503164 928 ntBASIC1.75□□□□□ -2.13
HSPG2P98160 MIR4498-201ENST00000577599 66 ntBASIC1.75□□□□□ -2.13
HSPG2P98160 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC1.75□□□□□ -2.13
HSPG2P98160 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC1.74□□□□□ -2.13
HSPG2P98160 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC1.74□□□□□ -2.13
HSPG2P98160 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 OR4G2P-202ENST00000641004 1759 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 NSRP1P1-201ENST00000444067 1693 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.74□□□□□ -2.13
HSPG2P98160 RPL23AP36-201ENST00000413895 458 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC006989.1-201ENST00000427212 131 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC011816.1-201ENST00000441346 546 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC1.74□□□□□ -2.13
HSPG2P98160 TRBV8-2-201ENST00000475637 270 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC126121.1-201ENST00000482313 553 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 TCP11X3P-202ENST00000514289 1254 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AL390334.1-201ENST00000556395 450 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 MIR8070-201ENST00000616510 88 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.74□□□□□ -2.13
HSPG2P98160 Y_RNA.140-201ENST00000363474 103 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 SNORA80E-201ENST00000384744 137 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC1.74□□□□□ -2.13
HSPG2P98160 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC1.74□□□□□ -2.13
HSPG2P98160 AC090281.1-201ENST00000523019 276 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC1.74□□□□□ -2.13
HSPG2P98160 MIR5047-201ENST00000579212 100 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC1.74□□□□□ -2.13
HSPG2P98160 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 AC083843.2-201ENST00000568248 6253 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
HSPG2P98160 AC048351.1-201ENST00000420064 602 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 AC005921.1-201ENST00000510589 286 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 OR5G4P-201ENST00000525251 760 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC1.74□□□□□ -2.13
HSPG2P98160 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC1.74□□□□□ -2.13
HSPG2P98160 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
HSPG2P98160 AC091564.4-201ENST00000533934 2194 ntBASIC1.74□□□□□ -2.13
HSPG2P98160 ELL2P4-201ENST00000446870 1376 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 MIR27B-201ENST00000385129 97 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 AL139039.1-201ENST00000401900 692 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 RPL23AP31-201ENST00000456160 467 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 AC010401.1-201ENST00000463867 348 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC1.73□□□□□ -2.13
HSPG2P98160 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HSPG2P98160 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC1.73□□□□□ -2.13
HSPG2P98160 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HSPG2P98160 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
HSPG2P98160 SNORA17.3-201ENST00000391159 129 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 OR2B8P-201ENST00000432841 938 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 RPS26P40-201ENST00000435209 294 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC1.73□□□□□ -2.13
HSPG2P98160 RNA5SP282-201ENST00000516355 108 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 SNORA31.21-201ENST00000517180 77 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HSPG2P98160 TAB3P1-202ENST00000452645 1634 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
HSPG2P98160 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC1.73□□□□□ -2.13
HSPG2P98160 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HSPG2P98160 RNU4-44P-201ENST00000363050 141 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 HMGB3P18-201ENST00000406327 590 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 AC093663.2-201ENST00000484625 313 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC1.73□□□□□ -2.13
HSPG2P98160 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC1.73□□□□□ -2.13
HSPG2P98160 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC1.73□□□□□ -2.13
HSPG2P98160 U3.6-201ENST00000363622 211 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 MTCO1P51-201ENST00000427672 1060 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 OR1AB1P-201ENST00000585564 761 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.73□□□□□ -2.13
HSPG2P98160 AC009570.1-201ENST00000609599 745 ntBASIC1.73□□□□□ -2.13
HSPG2P98160 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
HSPG2P98160 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HSPG2P98160 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HSPG2P98160 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC1.72□□□□□ -2.13
HSPG2P98160 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms