Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.25□□□□□ -1.57
RNF4P78317 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.25□□□□□ -1.57
RNF4P78317 AC105224.1-201ENST00000587055 421 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.25□□□□□ -1.57
RNF4P78317 AC011445.2-201ENST00000599274 173 ntBASIC5.25□□□□□ -1.57
RNF4P78317 FO393422.1-201ENST00000603908 708 ntBASIC5.25□□□□□ -1.57
RNF4P78317 AC025588.3-201ENST00000604182 274 ntBASIC5.25□□□□□ -1.57
RNF4P78317 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 CU639417.4-201ENST00000623928 207 ntBASIC5.25□□□□□ -1.57
RNF4P78317 MIR4302-201ENST00000638058 60 ntBASIC5.25□□□□□ -1.57
RNF4P78317 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.25□□□□□ -1.57
RNF4P78317 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
RNF4P78317 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF4P78317 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF4P78317 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
RNF4P78317 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 AC009902.3-201ENST00000606235 2172 ntBASIC5.24□□□□□ -1.57
RNF4P78317 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 AL359955.1-201ENST00000455242 3275 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AC067945.1-201ENST00000342609 618 ntBASIC5.24□□□□□ -1.57
RNF4P78317 Y_RNA.22-201ENST00000362492 102 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RNU5A-8P-201ENST00000364102 114 ntBASIC5.24□□□□□ -1.57
RNF4P78317 Y_RNA.231-201ENST00000364358 102 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RNU4-2-201ENST00000365668 141 ntBASIC5.24□□□□□ -1.57
RNF4P78317 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
RNF4P78317 AC092642.1-201ENST00000392417 425 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RN7SKP206-201ENST00000410823 293 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RN7SKP279-201ENST00000411383 298 ntBASIC5.24□□□□□ -1.57
RNF4P78317 OR6E1P-201ENST00000414424 923 ntBASIC5.24□□□□□ -1.57
RNF4P78317 OR1AA1P-201ENST00000419597 916 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.24□□□□□ -1.57
RNF4P78317 CHEK2P5-201ENST00000423877 246 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RPL34P6-201ENST00000432390 345 ntBASIC5.24□□□□□ -1.57
RNF4P78317 UBE2V1P13-201ENST00000436983 439 ntBASIC5.24□□□□□ -1.57
RNF4P78317 KRT8P51-201ENST00000438938 274 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.24□□□□□ -1.57
RNF4P78317 AL596266.1-201ENST00000448132 400 ntBASIC5.24□□□□□ -1.57
RNF4P78317 PPP1R2P5-201ENST00000457256 603 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RPS29P15-201ENST00000458329 171 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RNU6-329P-201ENST00000459618 107 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RPS4XP10-201ENST00000465034 731 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AL049714.1-201ENST00000466686 347 ntBASIC5.24□□□□□ -1.57
RNF4P78317 GMFBP1-201ENST00000467831 427 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AC004062.1-201ENST00000509926 645 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 RN7SKP13-201ENST00000515933 244 ntBASIC5.24□□□□□ -1.57
RNF4P78317 SNORD27.1-201ENST00000516319 72 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.24□□□□□ -1.57
RNF4P78317 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC5.24□□□□□ -1.57
RNF4P78317 AC128657.1-201ENST00000549459 145 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.24□□□□□ -1.57
RNF4P78317 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 AC026464.5-201ENST00000562497 722 ntBASIC5.24□□□□□ -1.57
RNF4P78317 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.24□□□□□ -1.57
RNF4P78317 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.24□□□□□ -1.57
RNF4P78317 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.24□□□□□ -1.57
RNF4P78317 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.24□□□□□ -1.57
RNF4P78317 AL691477.1-201ENST00000624398 162 ntBASIC5.24□□□□□ -1.57
RNF4P78317 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
RNF4P78317 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
RNF4P78317 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF4P78317 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.24□□□□□ -1.57
RNF4P78317 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF4P78317 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
RNF4P78317 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 AL022311.1-201ENST00000623726 19416 ntBASIC5.23□□□□□ -1.57
RNF4P78317 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 SMG1P7-201ENST00000565246 2704 ntBASIC5.23□□□□□ -1.57
RNF4P78317 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.23□□□□□ -1.57
RNF4P78317 RNA5SP242-201ENST00000364171 118 ntBASIC5.23□□□□□ -1.57
RNF4P78317 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF4P78317 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
RNF4P78317 AL583835.1-201ENST00000399570 407 ntBASIC5.23□□□□□ -1.57
RNF4P78317 CHEK2P3-201ENST00000416118 248 ntBASIC5.23□□□□□ -1.57
RNF4P78317 NCOR1P3-201ENST00000420479 303 ntBASIC5.23□□□□□ -1.57
RNF4P78317 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms