Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 AP001207.1-201ENST00000524051 481 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA3P55318 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA3P55318 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 AC092868.3-201ENST00000560515 784 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 MIR4286-201ENST00000580651 93 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 SNORD84-203ENST00000584275 78 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 BDH2P1-201ENST00000602288 736 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 AL627309.6-201ENST00000606857 840 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 MIR6733-201ENST00000635723 61 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA3P55318 AL136520.1-201ENST00000600311 1322 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA3P55318 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA3P55318 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 AC009487.2-201ENST00000420969 6821 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
FOXA3P55318 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 PPIAP31-201ENST00000405422 495 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA3P55318 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA3P55318 PSMA2P3-201ENST00000429685 675 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RPS29P6-201ENST00000438196 145 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 TPT1P12-201ENST00000448968 492 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RPL21P41-201ENST00000459863 264 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 RPL21P13-201ENST00000488305 481 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RPL7P38-201ENST00000488396 739 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RN7SL633P-201ENST00000488974 297 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA3P55318 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA3P55318 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC2.32□□□□□ -2.04
FOXA3P55318 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC2.32□□□□□ -2.04
FOXA3P55318 RN7SKP18-201ENST00000516005 275 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RNA5SP76-201ENST00000516277 87 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 SNORA70.17-201ENST00000516449 133 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 RNU4-18P-201ENST00000516751 149 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AC104986.1-201ENST00000517978 436 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA3P55318 OR5G4P-201ENST00000525251 760 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA3P55318 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA3P55318 MTCO3P13-201ENST00000577757 781 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.32□□□□□ -2.04
FOXA3P55318 AC006504.3-201ENST00000586818 523 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 CCDC58P3-201ENST00000590792 430 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AC091046.2-201ENST00000620775 665 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 FAM157B-203ENST00000639350 358 ntBASIC2.32□□□□□ -2.04
FOXA3P55318 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA3P55318 PTER-201ENST00000298942 3448 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA3P55318 AL035425.3-201ENST00000564206 4996 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 MAPK10-322ENST00000641485 4530 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.31□□□□□ -2.04
FOXA3P55318 MIR181B1-201ENST00000385240 110 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 AC109780.2-201ENST00000413467 845 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 NUP35P2-201ENST00000416748 943 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA3P55318 ATG3P1-201ENST00000419507 911 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXA3P55318 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC109583.1-201ENST00000432156 268 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 MUPP-201ENST00000438111 566 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 MED6P1-201ENST00000439659 713 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC096992.1-201ENST00000459808 709 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
FOXA3P55318 RNU6-1073P-201ENST00000517182 106 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 HIGD1AP18-201ENST00000520730 278 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA3P55318 GTF2IP22-201ENST00000554443 182 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA3P55318 MIR2682-201ENST00000580305 110 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA3P55318 AC090525.3-201ENST00000605601 189 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA3P55318 uc_338.25-201ENST00000613756 156 ntBASIC2.31□□□□□ -2.04
FOXA3P55318 ZYXP1-201ENST00000617638 118 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms