Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP006245.1-201ENST00000522549 120 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC008638.3-201ENST00000603341 463 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AL445435.1-201ENST00000604232 665 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 VN1R74P-201ENST00000613259 503 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXC9P31274 AC104446.1-201ENST00000613728 1321 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC111188.2-201ENST00000529697 1387 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC9P31274 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC9P31274 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
HOXC9P31274 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC9P31274 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXC9P31274 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXC9P31274 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXC9P31274 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC9P31274 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
HOXC9P31274 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC9P31274 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC9P31274 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
HOXC9P31274 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXC9P31274 MTATP6P20-201ENST00000414147 562 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC099336.2-201ENST00000422457 254 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC092634.2-201ENST00000428146 1010 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC234064.1-201ENST00000436312 247 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC127537.2-201ENST00000439258 465 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC009263.1-201ENST00000441193 1239 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXC9P31274 AC092155.2-201ENST00000454675 477 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC099560.2-201ENST00000457554 255 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC022795.1-201ENST00000473808 480 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXC9P31274 AC010627.1-201ENST00000503819 1294 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXC9P31274 AC091860.1-201ENST00000505723 432 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 FCF1P8-201ENST00000510322 597 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.59□□□□□ -1.67
HOXC9P31274 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC9P31274 AC090751.1-201ENST00000566966 267 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC233702.9-201ENST00000581528 203 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 MIR4276-201ENST00000584832 70 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXC9P31274 CKS1BP3-201ENST00000600888 237 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC106052.1-201ENST00000608029 497 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC008147.4-201ENST00000617570 1204 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC116563.2-201ENST00000624751 535 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AC009452.1-201ENST00000640823 606 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AL596275.2-204ENST00000641628 552 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 AL596275.2-206ENST00000641957 626 ntBASIC4.59□□□□□ -1.67
HOXC9P31274 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXC9P31274 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HOXC9P31274 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
HOXC9P31274 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXC9P31274 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXC9P31274 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 NMD3P1-201ENST00000439704 1488 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 ANKRD36P1-201ENST00000344424 659 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
HOXC9P31274 SNORA48.5-201ENST00000391143 135 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 C1DP1-201ENST00000426049 402 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.58□□□□□ -1.68
HOXC9P31274 AC002542.1-201ENST00000440683 193 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 MTND2P8-201ENST00000450555 1025 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 RNU6-1218P-201ENST00000458990 108 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.58□□□□□ -1.68
HOXC9P31274 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXC9P31274 AC010306.1-201ENST00000523223 1117 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXC9P31274 AC005476.1-201ENST00000554427 397 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXC9P31274 NIFKP8-201ENST00000560500 874 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AL450336.1-201ENST00000605180 586 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC024060.1-201ENST00000607052 494 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC006946.3-201ENST00000609791 756 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC015813.4-201ENST00000610469 179 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 AC017104.5-201ENST00000637647 639 ntBASIC4.58□□□□□ -1.68
HOXC9P31274 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.58□□□□□ -1.68
HOXC9P31274 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
HOXC9P31274 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
HOXC9P31274 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
HOXC9P31274 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 RNA5SP197-201ENST00000363357 119 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 SNORD116-12-201ENST00000384468 92 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 RNU6-906P-201ENST00000384700 70 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 MIR634-201ENST00000385208 97 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 HMGN2P8-201ENST00000391458 268 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms