Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.53□□□□□ -1.52
COL8A1P27658 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC104472.2-201ENST00000469035 601 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 AL161747.1-201ENST00000480068 358 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 AC093267.1-201ENST00000489176 961 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 AC105384.2-201ENST00000508433 640 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.53□□□□□ -1.52
COL8A1P27658 RNU6-313P-201ENST00000516317 112 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 HMGN1P28-201ENST00000521340 364 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.53□□□□□ -1.52
COL8A1P27658 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 CYCSP28-201ENST00000534284 321 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.53□□□□□ -1.52
COL8A1P27658 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL8A1P27658 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 MROH3P-201ENST00000435735 2676 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.53□□□□□ -1.52
COL8A1P27658 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 AC079753.1-201ENST00000623243 3868 ntBASIC5.53□□□□□ -1.52
COL8A1P27658 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL8A1P27658 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL8A1P27658 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 ZNF72P-201ENST00000425869 1908 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL8A1P27658 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5.52□□□□□ -1.53
COL8A1P27658 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 RBPJP2-201ENST00000618187 1444 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 AL391987.6-201ENST00000305671 199 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 SNORD50.1-201ENST00000362987 71 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 Y_RNA.237-201ENST00000364439 102 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 RNU4-7P-201ENST00000364758 141 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AL590290.1-201ENST00000405336 380 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 NMD3P2-201ENST00000421815 761 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 RPL7P37-201ENST00000425095 738 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 AC130360.1-201ENST00000425489 1117 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC5.52□□□□□ -1.53
COL8A1P27658 OR3D1P-201ENST00000438288 955 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 NOTCH2P1-201ENST00000443481 624 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.52□□□□□ -1.53
COL8A1P27658 NDUFB4P10-201ENST00000452541 359 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 RPL7P6-201ENST00000480903 738 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AC026801.1-201ENST00000497178 464 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 FTH1P21-201ENST00000512179 511 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AC097486.1-201ENST00000515331 210 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AC130365.2-201ENST00000525882 1201 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.52□□□□□ -1.53
COL8A1P27658 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.52□□□□□ -1.53
COL8A1P27658 LARP7P2-201ENST00000575306 125 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 MIR3941-201ENST00000582572 103 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 MIR5692C1-201ENST00000585309 91 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AL159153.1-201ENST00000619688 317 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
COL8A1P27658 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL8A1P27658 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL8A1P27658 ZNF285B-201ENST00000561698 1767 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
COL8A1P27658 Z97989.1-201ENST00000531702 2421 ntBASIC5.52□□□□□ -1.53
COL8A1P27658 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL8A1P27658 PARP4P1-201ENST00000435945 2337 ntBASIC5.51□□□□□ -1.53
COL8A1P27658 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
COL8A1P27658 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms