Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL5A1P20908 AL137072.1-201ENST00000603444 466 ntBASIC2.91□□□□□ -1.94
COL5A1P20908 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC2.91□□□□□ -1.94
COL5A1P20908 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL5A1P20908 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL5A1P20908 ASNSP3-201ENST00000451989 1306 ntBASIC2.9□□□□□ -1.94
COL5A1P20908 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
COL5A1P20908 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.9□□□□□ -1.94
COL5A1P20908 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.9□□□□□ -1.94
COL5A1P20908 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL5A1P20908 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL5A1P20908 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A1P20908 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.9□□□□□ -1.95
COL5A1P20908 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC2.9□□□□□ -1.95
COL5A1P20908 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A1P20908 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC2.9□□□□□ -1.95
COL5A1P20908 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A1P20908 BTBD7P2-201ENST00000441962 620 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL5A1P20908 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
COL5A1P20908 MIR2276-201ENST00000516886 89 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 SNORA31.21-201ENST00000517180 77 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.9□□□□□ -1.95
COL5A1P20908 AC010615.3-201ENST00000597319 394 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.9□□□□□ -1.95
COL5A1P20908 AL139286.1-201ENST00000604465 483 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 AC008121.2-201ENST00000614647 523 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 AC107905.1-201ENST00000616204 426 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 MIR7153-201ENST00000637758 57 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL5A1P20908 OR11H5P-202ENST00000641612 1325 ntBASIC2.9□□□□□ -1.95
COL5A1P20908 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.9□□□□□ -1.95
COL5A1P20908 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC2.89□□□□□ -1.95
COL5A1P20908 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A1P20908 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A1P20908 RNU6-859P-201ENST00000362728 107 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.89□□□□□ -1.95
COL5A1P20908 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 TOMM20P4-201ENST00000427861 435 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 MTATP6P11-201ENST00000428071 670 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A1P20908 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 AC114781.4-201ENST00000513707 639 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 SNORA64.4-201ENST00000516632 81 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.89□□□□□ -1.95
COL5A1P20908 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC2.89□□□□□ -1.95
COL5A1P20908 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.89□□□□□ -1.95
COL5A1P20908 AC006213.4-201ENST00000616184 634 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A1P20908 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL5A1P20908 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
COL5A1P20908 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 AC234781.4-201ENST00000419384 244 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AC099063.2-201ENST00000446360 662 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 EEF1B2P7-201ENST00000451177 676 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.89□□□□□ -1.95
COL5A1P20908 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC2.89□□□□□ -1.95
COL5A1P20908 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 NF1P10-201ENST00000613227 742 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL354696.1-201ENST00000614652 497 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL391597.1-201ENST00000618707 694 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL109620.1-201ENST00000618738 1197 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AP001005.3-201ENST00000622049 129 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 AL356490.1-201ENST00000623079 479 ntBASIC2.89□□□□□ -1.95
COL5A1P20908 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.89□□□□□ -1.95
COL5A1P20908 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
COL5A1P20908 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
COL5A1P20908 AP003122.5-201ENST00000527668 3766 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.88□□□□□ -1.95
COL5A1P20908 AC007342.7-201ENST00000624610 2337 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
COL5A1P20908 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.88□□□□□ -1.95
COL5A1P20908 RNU6-805P-201ENST00000365643 106 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.88□□□□□ -1.95
COL5A1P20908 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 MIR9-1-201ENST00000385198 89 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 MIR137-201ENST00000385223 102 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 RPL7P8-201ENST00000411964 730 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 AL513477.1-202ENST00000417061 214 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 AC087499.2-201ENST00000432861 149 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 AC112653.1-201ENST00000443851 386 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A1P20908 VN1R96P-201ENST00000446052 858 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A1P20908 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A1P20908 IGKV2D-23-201ENST00000518179 286 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms