Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 USP9YP13-201ENST00000417797 480 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 OFD1P18Y-201ENST00000420889 959 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A1P12109 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A1P12109 UBE2V1P5-201ENST00000440070 405 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 Z99127.3-201ENST00000448158 395 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 NFU1P2-201ENST00000448700 469 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A1P12109 AC146507.1-201ENST00000468335 354 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 AC034236.1-201ENST00000469891 373 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 AC108078.3-201ENST00000502633 489 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 AC098799.3-201ENST00000506095 438 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 AC010342.1-201ENST00000514047 877 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A1P12109 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.39□□□□□ -1.55
COL6A1P12109 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A1P12109 OR6C73P-201ENST00000546432 358 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.39□□□□□ -1.55
COL6A1P12109 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.39□□□□□ -1.55
COL6A1P12109 AL596327.1-201ENST00000603629 213 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 AC115621.1-201ENST00000604653 858 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 AC090578.1-201ENST00000604955 591 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 RNU4-89P-201ENST00000607443 133 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL6A1P12109 OR5BR1P-201ENST00000524992 1330 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A1P12109 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 MTND4P23-201ENST00000447723 1363 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
COL6A1P12109 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A1P12109 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A1P12109 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 OR52B1P-201ENST00000316506 909 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 Y_RNA.450-201ENST00000384198 113 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 Y_RNA.453-201ENST00000384223 109 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 SNORA40.3-201ENST00000390964 122 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 FCF1P10-201ENST00000407590 479 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A1P12109 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A1P12109 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A1P12109 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 MTCYBP24-201ENST00000420387 1106 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC062016.2-201ENST00000420950 676 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL139413.1-201ENST00000421309 217 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 RAD23BP1-201ENST00000421404 1227 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL645608.4-201ENST00000423619 154 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 RPL37P1-201ENST00000432310 284 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 MTND4LP10-201ENST00000435146 291 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 CBX1P1-201ENST00000440184 427 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL450023.3-201ENST00000440592 271 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 AC004865.1-201ENST00000442276 1003 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 AC000111.2-201ENST00000448200 210 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL033528.1-201ENST00000453780 140 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 RPL5P30-201ENST00000465511 891 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 LARP1BP2-201ENST00000486594 519 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A1P12109 AC091167.1-201ENST00000492017 396 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A1P12109 AC020593.1-201ENST00000507399 299 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC110792.2-201ENST00000510278 224 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC046134.1-201ENST00000514454 666 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 MTCO1P35-201ENST00000515270 228 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 RNY4P37-201ENST00000516225 96 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 RN7SKP96-201ENST00000516948 297 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 PAICSP4-201ENST00000517543 1253 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC138832.1-201ENST00000522871 556 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.38□□□□□ -1.55
COL6A1P12109 AC005730.3-201ENST00000583067 366 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 AC115286.1-201ENST00000604298 434 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC098614.4-201ENST00000607601 462 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AC234782.5-201ENST00000617723 324 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL158209.2-201ENST00000619266 216 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AL023881.1-201ENST00000621088 301 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 AP000648.2-201ENST00000624182 404 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
COL6A1P12109 AL731566.1-201ENST00000620490 1937 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A1P12109 AC104260.2-201ENST00000623551 3497 ntBASIC5.38□□□□□ -1.55
COL6A1P12109 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms