Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHOX2O60902 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHOX2O60902 MIR34B-201ENST00000385076 84 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 RPL31P1-201ENST00000398116 372 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 MIR887-201ENST00000401258 79 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 HNRNPDP2-201ENST00000406475 478 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SHOX2O60902 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.31□□□□□ -1.88
SHOX2O60902 DBIP2-201ENST00000419076 262 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.31□□□□□ -1.88
SHOX2O60902 AL353705.1-201ENST00000433468 480 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 RPS29P7-201ENST00000439662 171 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.31□□□□□ -1.88
SHOX2O60902 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.31□□□□□ -1.88
SHOX2O60902 AP004217.1-201ENST00000480579 346 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 RN7SL499P-201ENST00000481141 276 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.31□□□□□ -1.88
SHOX2O60902 AL139099.1-201ENST00000497398 403 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC023141.12-201ENST00000512399 199 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 RN7SKP157-201ENST00000516174 282 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 RNU2-58P-201ENST00000516403 183 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 IGKV2-36-201ENST00000519999 223 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC007991.1-201ENST00000522680 631 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AP004242.1-201ENST00000533701 349 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 CYCSP30-201ENST00000546447 172 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.31□□□□□ -1.88
SHOX2O60902 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.31□□□□□ -1.88
SHOX2O60902 MIMT1-201ENST00000597105 1050 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC005344.1-201ENST00000613391 459 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC022079.2-201ENST00000619739 566 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC091903.1-201ENST00000624322 454 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.31□□□□□ -1.88
SHOX2O60902 MIR6733-201ENST00000635723 61 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 MIR4278-201ENST00000636094 69 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC119674.1-207ENST00000641355 633 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 AC119674.1-220ENST00000641502 1048 ntBASIC3.31□□□□□ -1.88
SHOX2O60902 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHOX2O60902 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
SHOX2O60902 AC119744.1-201ENST00000454746 1715 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 AL355578.1-201ENST00000607405 1328 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 OR4A15-201ENST00000314706 1035 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 MIR421-201ENST00000365696 85 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHOX2O60902 RNU6-356P-201ENST00000384140 107 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC004987.3-201ENST00000413879 771 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 NEK4P1-201ENST00000433383 879 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 YWHAZP7-201ENST00000436906 631 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AL662791.1-201ENST00000441992 928 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 RAD1P2-201ENST00000446414 663 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 RPL36AP33-201ENST00000450395 310 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SHOX2O60902 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.3□□□□□ -1.88
SHOX2O60902 SNRPGP3-201ENST00000469405 227 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 VN1R105P-201ENST00000486595 910 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 HMGB1P47-201ENST00000511281 589 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 RNU1-103P-201ENST00000516502 125 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 RN7SKP234-201ENST00000517173 224 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC104997.1-201ENST00000519761 717 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.3□□□□□ -1.88
SHOX2O60902 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.3□□□□□ -1.88
SHOX2O60902 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.3□□□□□ -1.88
SHOX2O60902 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC069304.3-201ENST00000603938 1084 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AL391497.1-201ENST00000608671 547 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AL159169.3-201ENST00000608871 561 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 AC012314.7-201ENST00000619693 93 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 AC006065.5-201ENST00000623427 349 ntBASIC3.3□□□□□ -1.88
SHOX2O60902 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.3□□□□□ -1.88
SHOX2O60902 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHOX2O60902 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHOX2O60902 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.29□□□□□ -1.88
SHOX2O60902 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SHOX2O60902 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHOX2O60902 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SHOX2O60902 RNU1-70P-201ENST00000362618 164 ntBASIC3.29□□□□□ -1.88
SHOX2O60902 RN7SKP156-201ENST00000410308 342 ntBASIC3.29□□□□□ -1.88
SHOX2O60902 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms