Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC10.19□□□□□ -0.78
MSH5O43196 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 GJA10-201ENST00000369352 1652 ntAPPRIS P2 BASIC10.18□□□□□ -0.78
MSH5O43196 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC10.18□□□□□ -0.78
MSH5O43196 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC10.18□□□□□ -0.78
MSH5O43196 IMMTP1-201ENST00000435590 2219 ntBASIC10.18□□□□□ -0.78
MSH5O43196 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC10.18□□□□□ -0.78
MSH5O43196 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 RNU6-637P-201ENST00000384050 107 ntBASIC10.18□□□□□ -0.78
MSH5O43196 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC10.18□□□□□ -0.78
MSH5O43196 MYL2-203ENST00000548438 664 ntTSL 3 BASIC10.18□□□□□ -0.78
MSH5O43196 MIR5695-201ENST00000579717 85 ntBASIC10.18□□□□□ -0.78
MSH5O43196 AL121985.2-201ENST00000621192 555 ntBASIC10.18□□□□□ -0.78
MSH5O43196 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC10.18□□□□□ -0.78
MSH5O43196 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
MSH5O43196 MRPL22-201ENST00000265229 3035 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.78
MSH5O43196 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC10.17□□□□□ -0.78
MSH5O43196 AC105235.1-201ENST00000623208 1816 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AC110597.1-201ENST00000562669 3176 ntBASIC10.17□□□□□ -0.78
MSH5O43196 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 Y_RNA.323-201ENST00000365157 109 ntBASIC10.17□□□□□ -0.78
MSH5O43196 MIR135A2-201ENST00000384854 100 ntBASIC10.17□□□□□ -0.78
MSH5O43196 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
MSH5O43196 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC10.17□□□□□ -0.78
MSH5O43196 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 GAS5-211ENST00000432536 959 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 EIF4A1P11-201ENST00000451239 222 ntBASIC10.17□□□□□ -0.78
MSH5O43196 RN7SL74P-201ENST00000464966 299 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AC022730.1-201ENST00000473114 568 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AK3P2-201ENST00000507976 429 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AC006070.1-201ENST00000508151 193 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC10.17□□□□□ -0.78
MSH5O43196 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 NDUFA3P4-201ENST00000560814 250 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AC023575.1-201ENST00000580510 358 ntBASIC10.17□□□□□ -0.78
MSH5O43196 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
MSH5O43196 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
MSH5O43196 AC107980.1-201ENST00000558671 3355 ntBASIC10.17□□□□□ -0.78
MSH5O43196 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC10.17□□□□□ -0.78
MSH5O43196 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
MSH5O43196 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
MSH5O43196 FOLH1B-202ENST00000529567 2145 ntBASIC10.16□□□□□ -0.78
MSH5O43196 ERG-206ENST00000398911 4914 ntTSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
MSH5O43196 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC10.16□□□□□ -0.78
MSH5O43196 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 TP63-203ENST00000354600 4668 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC10.16□□□□□ -0.78
MSH5O43196 AC079741.1-201ENST00000321498 212 ntBASIC10.16□□□□□ -0.78
MSH5O43196 RN7SKP50-201ENST00000364694 315 ntBASIC10.16□□□□□ -0.78
MSH5O43196 SNORA10-201ENST00000384084 133 ntBASIC10.16□□□□□ -0.78
MSH5O43196 SNORA19.1-201ENST00000410656 129 ntBASIC10.16□□□□□ -0.78
MSH5O43196 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC10.16□□□□□ -0.78
MSH5O43196 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC10.16□□□□□ -0.78
MSH5O43196 RPS10P14-201ENST00000440748 502 ntBASIC10.16□□□□□ -0.78
MSH5O43196 AL450023.1-201ENST00000450868 751 ntBASIC10.16□□□□□ -0.78
MSH5O43196 MTND6P8-201ENST00000503471 522 ntBASIC10.16□□□□□ -0.78
MSH5O43196 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 Y_RNA.690-201ENST00000516603 95 ntBASIC10.16□□□□□ -0.78
MSH5O43196 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC10.16□□□□□ -0.78
MSH5O43196 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC10.16□□□□□ -0.78
MSH5O43196 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
MSH5O43196 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 AL078604.3-201ENST00000615580 211 ntBASIC10.16□□□□□ -0.78
MSH5O43196 SCARNA4-201ENST00000629045 128 ntBASIC10.16□□□□□ -0.78
MSH5O43196 AC005841.2-201ENST00000637658 1167 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC10.16□□□□□ -0.78
MSH5O43196 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
MSH5O43196 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 157.4 ms