Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 SAGE4P-201ENST00000442271 3381 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 RNU4-91P-201ENST00000364778 135 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 U3.22-201ENST00000391120 215 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL031779.1-201ENST00000415663 330 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 RPL7P57-201ENST00000423238 740 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC234779.1-201ENST00000425910 285 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC023347.2-201ENST00000433994 462 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 LARP1BP3-201ENST00000437229 869 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL512286.1-201ENST00000439244 400 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC069285.2-201ENST00000440210 275 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 MTCO1P19-201ENST00000443487 500 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 RPL36AP15-201ENST00000444514 266 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 CDC27P1-201ENST00000445384 715 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AP000936.2-201ENST00000447151 681 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 NUTF2P7-201ENST00000453086 375 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AURKAPS2-201ENST00000454983 333 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 RPL12P20-201ENST00000475538 479 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC013356.1-201ENST00000489027 564 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 CBX3P3-201ENST00000508108 532 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 VWA8P1-201ENST00000510889 176 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC022447.1-201ENST00000515358 464 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 PDCD5P1-201ENST00000543528 309 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL109766.1-201ENST00000555080 552 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 RN7SL690P-201ENST00000582087 240 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC090181.2-201ENST00000602975 672 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC005191.1-201ENST00000603950 358 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL031775.1-201ENST00000607014 887 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC103591.3-201ENST00000608684 209 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC007497.1-201ENST00000610421 561 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AL359535.1-201ENST00000612100 1087 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 AC025594.3-201ENST00000613068 790 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 OR52H1-202ENST00000641796 1061 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 IQCB2P-201ENST00000401788 1633 ntBASIC4.49□□□□□ -1.69
VPS4AQ9UN37 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS4AQ9UN37 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RNU6-462P-201ENST00000362659 105 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RNU6-660P-201ENST00000364566 109 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RNU6-441P-201ENST00000384545 106 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 DSTNP4-201ENST00000399472 474 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RNU2-28P-201ENST00000410457 189 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RPS3AP9-201ENST00000417027 792 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 USP9YP28-201ENST00000435142 589 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC005154.2-201ENST00000438110 379 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RPL36AP33-201ENST00000450395 310 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 ZNF114P1-201ENST00000453500 292 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC133473.1-201ENST00000455173 299 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 MTCO3P2-201ENST00000457365 171 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 ARPC3P2-201ENST00000457786 533 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RPL30P9-201ENST00000465586 330 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 OR52A4P-201ENST00000472867 958 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC116337.2-201ENST00000477662 156 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC068724.1-201ENST00000487100 792 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 RNU1-6P-201ENST00000516290 144 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 MYL12AP1-201ENST00000518490 515 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC239860.2-201ENST00000525886 270 ntBASIC4.48□□□□□ -1.69
VPS4AQ9UN37 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms