Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC008785.1-201ENST00000624475 456 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC120349.2-201ENST00000625002 298 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC068724.3-201ENST00000625906 87 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.73
VPS28Q9UK41 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC012020.1-201ENST00000624541 1728 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNA5SP502-201ENST00000362694 119 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNU6-560P-201ENST00000364007 108 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNU6-335P-201ENST00000364563 113 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC016769.3-201ENST00000396562 315 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RPL31P1-201ENST00000398116 372 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 ERHP2-201ENST00000402323 299 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNA5SP317-201ENST00000410176 116 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RN7SKP33-201ENST00000410942 340 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNA5SP311-201ENST00000411290 116 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AL513174.1-201ENST00000423182 629 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC092017.2-201ENST00000427600 362 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RPL23AP76-201ENST00000441860 458 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 MTCYBP11-201ENST00000447254 1109 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 BNIP3P41-201ENST00000503774 571 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC017037.1-201ENST00000508460 471 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNA5SP315-201ENST00000516340 116 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 RNA5SP312-201ENST00000517068 116 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC023813.2-201ENST00000564321 469 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC007224.1-201ENST00000564410 144 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AP001269.3-201ENST00000588718 329 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 SNRPGP15-201ENST00000600149 222 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 BNIP3P26-201ENST00000600827 554 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 MTND3P19-201ENST00000603825 345 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AC010608.2-201ENST00000624830 470 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 CYP3A51P-201ENST00000633513 256 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 AL157700.1-201ENST00000561973 1432 ntBASIC4.27□□□□□ -1.73
VPS28Q9UK41 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
VPS28Q9UK41 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS28Q9UK41 NUP58P1-201ENST00000502546 1738 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC016588.2-201ENST00000632484 3021 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC018555.1-201ENST00000567548 1980 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 RNA5SP513-201ENST00000364648 118 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 RNU11-4P-201ENST00000391149 133 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 RNU4-78P-201ENST00000410940 126 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC006548.1-201ENST00000427470 102 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 RN7SL585P-201ENST00000470538 280 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 NCOR1P1-202ENST00000486162 291 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 RN7SL604P-201ENST00000492589 296 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC008837.2-201ENST00000513076 418 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 RNU6-415P-201ENST00000516252 97 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AP001636.2-201ENST00000525517 696 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 HIGD1AP17-201ENST00000554576 276 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AL132657.2-201ENST00000564417 358 ntBASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS28Q9UK41 AC004825.2-201ENST00000616634 455 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms