Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC009852.2-201ENST00000567898 485 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 MIR5697-201ENST00000578045 78 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 MIR4307-201ENST00000582802 84 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC092794.1-201ENST00000612734 582 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC068137.3-201ENST00000639191 341 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC073869.6-201ENST00000640656 341 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC006378.2-201ENST00000623178 2476 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC107027.3-201ENST00000565095 3473 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 RNU6-1243P-201ENST00000364028 107 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 RNU6-297P-201ENST00000384636 107 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC007738.1-201ENST00000413892 348 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 FNDC3CP-201ENST00000420795 1155 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL356583.2-201ENST00000426536 280 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL732292.1-201ENST00000426692 226 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 OR2B8P-201ENST00000432841 938 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 MTCO2P3-201ENST00000442543 421 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL022238.1-201ENST00000442557 355 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC104073.1-201ENST00000451988 151 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL356981.1-201ENST00000454879 684 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 SNRPFP4-201ENST00000456366 242 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 RPL31P50-201ENST00000471002 296 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 RPL36AP41-201ENST00000493820 306 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC090453.1-201ENST00000495560 436 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC104057.1-201ENST00000515547 497 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 HSPA8P13-201ENST00000523715 472 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC016957.1-201ENST00000534895 309 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 ZNF519P3-201ENST00000557158 1032 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AP001180.3-201ENST00000582221 145 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 U3.53-201ENST00000628922 216 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC005832.2-201ENST00000538921 1430 ntBASIC4.86□□□□□ -1.63
TDP1Q9NUW8 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
TDP1Q9NUW8 AP000542.2-201ENST00000623199 6179 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 SNORA40.3-201ENST00000390964 122 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 FCF1P9-201ENST00000412546 282 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 NUP35P2-201ENST00000416748 943 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC073136.2-201ENST00000417282 849 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC004690.1-201ENST00000418216 328 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AL592293.2-201ENST00000422292 996 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 RPL12P34-201ENST00000424532 479 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 COX6CP15-201ENST00000426313 211 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AL353597.2-202ENST00000434901 373 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 NMNAT1P2-201ENST00000435192 860 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 PAXBP1P1-201ENST00000449315 447 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 OR6K1P-201ENST00000456766 971 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms