Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 KPNA2P3-201ENST00000584190 848 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC103881.1-201ENST00000603476 538 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL031281.1-201ENST00000604049 488 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC113403.1-201ENST00000604910 193 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AP000676.3-201ENST00000623299 569 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC120349.2-201ENST00000625002 298 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 MIR6830-201ENST00000636015 70 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 OR11H5P-202ENST00000641612 1325 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 Y_RNA.25-201ENST00000362528 102 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 Y_RNA.311-201ENST00000365068 96 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 RNU6-1226P-201ENST00000384317 107 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 ATP5F1P3-201ENST00000397213 657 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC073264.1-201ENST00000411508 416 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 RPS15AP40-201ENST00000419621 391 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL732292.1-201ENST00000426692 226 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC091390.1-201ENST00000433904 331 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL008629.1-201ENST00000438615 184 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 RPL21P133-201ENST00000443666 476 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 PHBP16-201ENST00000446318 950 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 HMGB3P22-202ENST00000451823 572 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTND1P16-201ENST00000465177 898 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 S100A11P1-201ENST00000477525 312 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC005726.1-201ENST00000494679 427 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 SETP14-201ENST00000497538 873 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTCYBP17-201ENST00000503579 789 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 SNX5P1-201ENST00000505757 1041 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC109445.1-201ENST00000512356 383 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTND2P38-201ENST00000522536 667 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AP000827.1-201ENST00000527814 258 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC079171.1-201ENST00000568788 914 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 OR4K7P-201ENST00000580232 945 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 IPO5P1-202ENST00000600039 287 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC025946.2-201ENST00000603398 234 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 YWHAQP7-201ENST00000603536 658 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC090948.1-201ENST00000607464 549 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC233309.1-201ENST00000619522 751 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 MIR7702-201ENST00000621931 59 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL359715.5-201ENST00000623431 443 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AC007490.1-201ENST00000624321 703 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 CU459211.1-201ENST00000635667 749 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTND2P41-201ENST00000637599 773 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NKX3-1Q99801 AP000526.1-201ENST00000603308 1388 ntBASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
NKX3-1Q99801 MTND5P28-201ENST00000438005 1594 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 AL158163.1-201ENST00000603915 1649 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NKX3-1Q99801 ERCC6-202ENST00000374127 1782 ntBASIC3.59□□□□□ -1.83
NKX3-1Q99801 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms