Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 UBTFL10-201ENST00000528532 562 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC015712.3-201ENST00000559380 164 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 MIR4498-201ENST00000577599 66 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AP000942.3-201ENST00000603702 160 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC087190.4-201ENST00000574616 8334 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AL590290.1-201ENST00000405336 380 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC092608.2-201ENST00000624427 218 ntBASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 SNORA36C-201ENST00000384289 132 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 MTND4P2-201ENST00000507767 1203 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AP001317.1-201ENST00000531194 960 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 THAP12P8-201ENST00000447914 2115 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AP002088.1-201ENST00000382740 395 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 RPL21P99-201ENST00000480369 423 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AC108729.3-201ENST00000513484 108 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 OR4K7P-201ENST00000580232 945 ntBASIC2.7□□□□□ -1.98
VPS13AQ96RL7 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13AQ96RL7 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AL137014.1-201ENST00000420490 1226 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 OR4G11P-201ENST00000492842 939 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC025034.2-201ENST00000623264 286 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC092593.1-201ENST00000515413 1815 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 RNU6-76P-201ENST00000384060 104 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 CYCSP45-201ENST00000402289 315 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 HMGB1P48-201ENST00000446155 598 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC146507.2-201ENST00000460608 476 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC017007.4-201ENST00000503353 1352 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AL121834.1-202ENST00000404494 277 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AL356320.1-201ENST00000429616 163 ntBASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13AQ96RL7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 MIR26A1-201ENST00000362205 77 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 PTP4A1P5-201ENST00000420305 455 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AC108860.1-201ENST00000484521 383 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 OR4G2P-202ENST00000641004 1759 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 RANP7-201ENST00000418085 644 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 DPH3P2-201ENST00000422618 250 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 HMGB1P16-201ENST00000447155 540 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AP000926.3-201ENST00000497201 299 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 HMGB1P19-201ENST00000517578 577 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AP003102.1-201ENST00000525638 661 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 OR5BN1P-201ENST00000532955 829 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 AL353997.5-201ENST00000618886 171 ntBASIC2.68□□□□□ -1.98
VPS13AQ96RL7 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
VPS13AQ96RL7 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS13AQ96RL7 RPL7P52-201ENST00000449200 742 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms