Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 uc_338.9-201ENST00000617424 182 ntBASIC3.52□□□□□ -1.85
SHHQ15465 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 AC139713.2-210ENST00000641741 992 ntBASIC3.52□□□□□ -1.85
SHHQ15465 CR383658.2-201ENST00000547576 1525 ntBASIC3.52□□□□□ -1.85
SHHQ15465 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.52□□□□□ -1.85
SHHQ15465 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.52□□□□□ -1.85
SHHQ15465 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHHQ15465 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
SHHQ15465 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.51□□□□□ -1.85
SHHQ15465 AC104446.1-201ENST00000613728 1321 ntBASIC3.51□□□□□ -1.85
SHHQ15465 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.51□□□□□ -1.85
SHHQ15465 MIR423-201ENST00000362201 94 ntBASIC3.51□□□□□ -1.85
SHHQ15465 RNU6-618P-201ENST00000363518 112 ntBASIC3.51□□□□□ -1.85
SHHQ15465 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHHQ15465 SNORA54-201ENST00000384281 123 ntBASIC3.51□□□□□ -1.85
SHHQ15465 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
SHHQ15465 RNA5SP498-201ENST00000411342 120 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AL159169.1-201ENST00000421119 127 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.51□□□□□ -1.85
SHHQ15465 AL138785.1-201ENST00000425821 331 ntBASIC3.51□□□□□ -1.85
SHHQ15465 TRIM60P13-201ENST00000432350 1283 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AC108938.1-201ENST00000451204 136 ntBASIC3.51□□□□□ -1.85
SHHQ15465 HMGB3P22-202ENST00000451823 572 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AC089999.1-201ENST00000460336 374 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
SHHQ15465 ATG10-AS1-201ENST00000504846 648 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.51□□□□□ -1.85
SHHQ15465 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.51□□□□□ -1.85
SHHQ15465 AC021146.7-201ENST00000509604 775 ntBASIC3.51□□□□□ -1.85
SHHQ15465 RN7SKP132-201ENST00000516001 208 ntBASIC3.51□□□□□ -1.85
SHHQ15465 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.51□□□□□ -1.85
SHHQ15465 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.51□□□□□ -1.85
SHHQ15465 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.51□□□□□ -1.85
SHHQ15465 AC139769.3-201ENST00000618383 175 ntBASIC3.51□□□□□ -1.85
SHHQ15465 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.51□□□□□ -1.85
SHHQ15465 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
SHHQ15465 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.51□□□□□ -1.85
SHHQ15465 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHHQ15465 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.51□□□□□ -1.85
SHHQ15465 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.5□□□□□ -1.85
SHHQ15465 MTCO1P8-201ENST00000416914 1523 ntBASIC3.5□□□□□ -1.85
SHHQ15465 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SHHQ15465 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.5□□□□□ -1.85
SHHQ15465 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.5□□□□□ -1.85
SHHQ15465 SNORA7.4-201ENST00000384249 137 ntBASIC3.5□□□□□ -1.85
SHHQ15465 MTND3P20-201ENST00000407663 186 ntBASIC3.5□□□□□ -1.85
SHHQ15465 RHEBP3-201ENST00000411920 351 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.5□□□□□ -1.85
SHHQ15465 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.5□□□□□ -1.85
SHHQ15465 AC009965.2-201ENST00000425328 970 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.5□□□□□ -1.85
SHHQ15465 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.5□□□□□ -1.85
SHHQ15465 AC007563.3-201ENST00000433233 371 ntBASIC3.5□□□□□ -1.85
SHHQ15465 Z85994.2-201ENST00000434327 452 ntBASIC3.5□□□□□ -1.85
SHHQ15465 RSL24D1P8-201ENST00000434442 492 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.5□□□□□ -1.85
SHHQ15465 MTND2P25-201ENST00000449028 610 ntBASIC3.5□□□□□ -1.85
SHHQ15465 HMGN2P7-201ENST00000456186 273 ntBASIC3.5□□□□□ -1.85
SHHQ15465 RNU7-27P-201ENST00000459281 62 ntBASIC3.5□□□□□ -1.85
SHHQ15465 TRBV12-1-201ENST00000479785 344 ntBASIC3.5□□□□□ -1.85
SHHQ15465 NIPA2P2-201ENST00000496376 1083 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.5□□□□□ -1.85
SHHQ15465 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.5□□□□□ -1.85
SHHQ15465 AC108120.2-201ENST00000512973 294 ntBASIC3.5□□□□□ -1.85
SHHQ15465 RNA5SP367-201ENST00000516557 118 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC3.5□□□□□ -1.85
SHHQ15465 NDUFB9P3-201ENST00000521269 501 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.5□□□□□ -1.85
SHHQ15465 AC006518.1-201ENST00000541449 943 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC026333.2-201ENST00000542164 106 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC008083.2-201ENST00000546707 476 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC091544.4-201ENST00000555268 342 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.5□□□□□ -1.85
SHHQ15465 MIR4319-201ENST00000577285 85 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC022884.3-201ENST00000579571 248 ntBASIC3.5□□□□□ -1.85
SHHQ15465 BX322635.1-201ENST00000605804 496 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AC087241.4-201ENST00000612441 480 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AL157817.1-201ENST00000614264 790 ntBASIC3.5□□□□□ -1.85
SHHQ15465 AL391597.1-201ENST00000618707 694 ntBASIC3.5□□□□□ -1.85
SHHQ15465 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
SHHQ15465 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SHHQ15465 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SHHQ15465 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.5□□□□□ -1.85
SHHQ15465 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
SHHQ15465 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHHQ15465 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SHHQ15465 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SHHQ15465 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
SHHQ15465 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.49□□□□□ -1.85
SHHQ15465 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.49□□□□□ -1.85
SHHQ15465 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SHHQ15465 AC066616.2-201ENST00000559334 1481 ntBASIC3.49□□□□□ -1.85
SHHQ15465 AC000403.1-201ENST00000613696 3585 ntBASIC3.49□□□□□ -1.85
SHHQ15465 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms