Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
COL4A4P53420 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A4P53420 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 AC138393.1-206ENST00000540997 1886 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 U3.12-201ENST00000364498 214 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 MIR620-201ENST00000385232 95 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AC003685.2-201ENST00000422795 395 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.38□□□□□ -1.87
COL4A4P53420 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.38□□□□□ -1.87
COL4A4P53420 RPS12P5-201ENST00000423449 371 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.38□□□□□ -1.87
COL4A4P53420 RPL37P4-201ENST00000448908 268 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.38□□□□□ -1.87
COL4A4P53420 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.38□□□□□ -1.87
COL4A4P53420 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.38□□□□□ -1.87
COL4A4P53420 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.38□□□□□ -1.87
COL4A4P53420 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL4A4P53420 AP003102.1-201ENST00000525638 661 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.38□□□□□ -1.87
COL4A4P53420 AC105036.1-201ENST00000566222 271 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AC040174.2-201ENST00000602701 465 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AC112503.1-201ENST00000608436 391 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AL391834.1-201ENST00000609609 560 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 AC099654.9-201ENST00000637055 678 ntBASIC3.38□□□□□ -1.87
COL4A4P53420 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.38□□□□□ -1.87
COL4A4P53420 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
COL4A4P53420 MTND4P10-201ENST00000446199 1363 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 GABRG2-229ENST00000641017 3628 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 OR5J1P-201ENST00000313544 939 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 RNU6-584P-201ENST00000410350 95 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC007899.1-201ENST00000412776 775 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 RPS7P13-201ENST00000413955 498 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 RPS12P23-201ENST00000419579 400 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 ZNF885P-201ENST00000420174 1098 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AL139413.1-201ENST00000421309 217 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 RPL17P35-201ENST00000432217 549 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 HMGB1P18-201ENST00000438801 619 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.37□□□□□ -1.87
COL4A4P53420 AC099063.2-201ENST00000446360 662 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AL109933.2-201ENST00000452651 260 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A4P53420 AC126389.1-201ENST00000477436 290 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 RPS4XP13-201ENST00000483219 789 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AP000926.3-201ENST00000497201 299 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.37□□□□□ -1.87
COL4A4P53420 OR10D4P-201ENST00000525892 951 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC139103.1-201ENST00000534696 1030 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.37□□□□□ -1.87
COL4A4P53420 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A4P53420 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.37□□□□□ -1.87
COL4A4P53420 NRBF2P5-201ENST00000603087 788 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC025946.2-201ENST00000603398 234 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 RPL23AP92-201ENST00000603609 255 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AL161912.3-201ENST00000605404 628 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC112220.2-201ENST00000605513 533 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.37□□□□□ -1.87
COL4A4P53420 AL592295.2-201ENST00000612578 206 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A4P53420 AL356490.1-201ENST00000623079 479 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
COL4A4P53420 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
COL4A4P53420 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.37□□□□□ -1.87
COL4A4P53420 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.37□□□□□ -1.87
COL4A4P53420 AL451142.2-201ENST00000429076 2090 ntBASIC3.37□□□□□ -1.87
COL4A4P53420 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A4P53420 MTATP6P31-201ENST00000406985 692 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 SSR1P2-201ENST00000415208 787 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A4P53420 AL139281.1-201ENST00000422120 335 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC106901.1-201ENST00000425086 698 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL512661.1-201ENST00000434586 1253 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC093156.1-201ENST00000440382 670 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 RAB28P3-201ENST00000448325 597 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC112492.1-201ENST00000449607 712 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A4P53420 AL122001.1-201ENST00000457027 370 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A4P53420 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A4P53420 TRAV31-201ENST00000502780 342 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A4P53420 AC009812.2-201ENST00000517657 457 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.36□□□□□ -1.87
COL4A4P53420 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A4P53420 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 MIR4524B-201ENST00000581569 115 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC025811.1-201ENST00000604312 472 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms