Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNORD109A-201ENST00000459128 67 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
BRCA1P38398 AP002812.4-201ENST00000532139 286 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.72□□□□□ -1.81
BRCA1P38398 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.72□□□□□ -1.81
BRCA1P38398 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.72□□□□□ -1.81
BRCA1P38398 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.72□□□□□ -1.81
BRCA1P38398 AC123768.4-201ENST00000616244 701 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
BRCA1P38398 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
BRCA1P38398 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
BRCA1P38398 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
BRCA1P38398 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
BRCA1P38398 AC019155.1-201ENST00000382242 574 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 MT-TP-201ENST00000387461 68 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AC007563.3-201ENST00000433233 371 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 UBL5P3-201ENST00000475112 231 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC3.71□□□□□ -1.82
BRCA1P38398 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.71□□□□□ -1.82
BRCA1P38398 AC141257.3-201ENST00000572906 215 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 LINC00901.1-201ENST00000617252 152 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
BRCA1P38398 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
BRCA1P38398 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
BRCA1P38398 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
BRCA1P38398 SNORA9.2-201ENST00000365361 133 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.71□□□□□ -1.82
BRCA1P38398 SNORD15B-201ENST00000384714 146 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
BRCA1P38398 NPM1P24-201ENST00000428039 894 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.71□□□□□ -1.82
BRCA1P38398 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AP002884.2-201ENST00000471647 395 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.71□□□□□ -1.82
BRCA1P38398 MIR5047-201ENST00000579212 100 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AP004372.1-201ENST00000604842 844 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AL008729.2-201ENST00000606393 473 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
BRCA1P38398 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
BRCA1P38398 SYT14P1-202ENST00000600441 1448 ntBASIC3.71□□□□□ -1.82
BRCA1P38398 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 AC017002.4-201ENST00000604721 1525 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 OR1S2-201ENST00000302592 978 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 RNU6-386P-201ENST00000362650 107 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 MIR9-1-201ENST00000385198 89 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 HMGN2P8-201ENST00000391458 268 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 RNU6-603P-201ENST00000411403 107 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.7□□□□□ -1.82
BRCA1P38398 METTL15P1-201ENST00000481421 1045 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 AC114967.1-201ENST00000504890 259 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 AC017037.2-201ENST00000513850 890 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 RNU6-491P-201ENST00000516099 110 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.7□□□□□ -1.82
BRCA1P38398 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.7□□□□□ -1.82
BRCA1P38398 AL121576.1-201ENST00000556055 276 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 MIR4512-201ENST00000583257 77 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 AC005021.1-201ENST00000608730 355 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 RMST_5.1-201ENST00000618704 126 ntBASIC3.7□□□□□ -1.82
BRCA1P38398 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
BRCA1P38398 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
BRCA1P38398 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
BRCA1P38398 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC009313.2-201ENST00000417893 1941 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 MIR92A2-201ENST00000385299 75 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AL353692.2-201ENST00000407054 335 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 AC099336.2-201ENST00000422457 254 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AC063976.3-201ENST00000426849 329 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC133473.1-201ENST00000455173 299 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 RPS17P11-201ENST00000474297 293 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 HSPE1P6-201ENST00000479457 291 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC107918.3-201ENST00000533272 382 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 MIR7843-201ENST00000622274 79 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.69□□□□□ -1.82
BRCA1P38398 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
BRCA1P38398 OR52B1P-201ENST00000316506 909 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms