Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 MTCO2P25-201ENST00000447065 681 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 HMGN3P1-201ENST00000453847 193 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 RPL23AP24-201ENST00000458203 385 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 RPS23P7-201ENST00000466210 444 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 RPS20P21-201ENST00000466859 343 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 RNA5SP519-201ENST00000516480 119 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 TRAV8-5-201ENST00000537369 341 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC007599.1-201ENST00000568688 1174 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC023575.1-201ENST00000580510 358 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC107982.3-201ENST00000584957 985 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC025811.1-201ENST00000604312 472 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC115621.1-201ENST00000604653 858 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 MLECP1-201ENST00000615893 709 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC008785.1-201ENST00000624475 456 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AP000843.1-201ENST00000624880 701 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 ZNF542P-204ENST00000482727 1305 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 DBF4P1-201ENST00000412976 1892 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC090229.1-201ENST00000590983 1609 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NKX3-1Q99801 MARK2P15-201ENST00000432204 2186 ntBASIC3.62□□□□□ -1.83
NKX3-1Q99801 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
NKX3-1Q99801 AC104454.1-201ENST00000421341 1401 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 OR5P1P-201ENST00000299512 925 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC126755.2-208ENST00000327792 462 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC138969.1-213ENST00000331436 462 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 MIR649-201ENST00000384843 97 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 RNU4-25P-201ENST00000410569 230 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 PTP4A1P5-201ENST00000420305 455 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 RPS27AP7-201ENST00000422792 455 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC092017.2-201ENST00000427600 362 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 UBE2V1P1-201ENST00000430836 445 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL645939.1-201ENST00000453429 797 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC011276.1-201ENST00000469688 323 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC109327.1-201ENST00000471666 403 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL136126.1-201ENST00000473603 402 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 RPL7P18-201ENST00000478965 734 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 MTND2P14-201ENST00000482139 351 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 HMGB1P28-201ENST00000507778 552 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 HSPE1P23-201ENST00000509838 286 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC010587.2-201ENST00000511727 448 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 SNORA3.4-201ENST00000515969 96 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC027309.2-201ENST00000520566 192 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC022790.1-201ENST00000522872 204 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 AL389895.1-201ENST00000554127 252 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 MTCYBP27-201ENST00000555160 670 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.61□□□□□ -1.83
NKX3-1Q99801 PARP1P2-201ENST00000556806 195 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 AC087465.1-201ENST00000560574 245 ntBASIC3.61□□□□□ -1.83
NKX3-1Q99801 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms