Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 AL157394.1-201ENST00000562983 1224 ntBASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 AC011468.4-201ENST00000603942 409 ntBASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 HSPE1P14-201ENST00000605812 302 ntBASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 AC063943.3-201ENST00000615562 356 ntBASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
RUFY4Q6ZNE9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.49
RUFY4Q6ZNE9 AC097063.1-201ENST00000426714 1797 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 CYB5AP4-201ENST00000396692 399 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RPS3AP36-201ENST00000398190 775 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 MTND4LP20-201ENST00000402379 270 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RPL21P67-201ENST00000402896 478 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 CTSL3P-202ENST00000412179 788 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RPL6P29-201ENST00000414863 865 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 GNG5P5-201ENST00000420444 220 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 DDX39BP1-205ENST00000422507 192 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 USP12PX-201ENST00000432383 1057 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RPL19P16-201ENST00000433839 588 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 CBX1P1-201ENST00000440184 427 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RPL17P49-201ENST00000443728 411 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AP000542.1-201ENST00000448473 371 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC090804.1-201ENST00000448870 490 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 TPT1P13-201ENST00000449760 499 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC092324.1-201ENST00000468671 324 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC005726.1-201ENST00000494679 427 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC006390.1-201ENST00000508068 283 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 OR51K1P-201ENST00000510214 950 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC006427.1-201ENST00000514359 712 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 Y_RNA.672-201ENST00000516289 104 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AP003034.1-201ENST00000534621 422 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC123786.2-201ENST00000603459 275 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 COX6CP4-201ENST00000605798 228 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC008536.2-201ENST00000607284 349 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 AC090948.2-201ENST00000607363 564 ntBASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
RUFY4Q6ZNE9 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC009229.4-201ENST00000623854 1947 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 GNG5P1-201ENST00000255500 204 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 RNA5SP428-201ENST00000365129 132 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 RPL26P29-201ENST00000415623 438 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 COX6B1P1-201ENST00000415962 213 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 CHEK2P3-201ENST00000416118 248 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC073464.1-201ENST00000429823 534 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 KNOP1P3-201ENST00000446933 426 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 MTCO3P20-201ENST00000454926 688 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 MTND1P3-201ENST00000484956 952 ntBASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.7□□□□□ -1.5
RUFY4Q6ZNE9 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 1021.4 ms