Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.08□□□□□ -1.6
SMARCA1P28370 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 MIR331-201ENST00000362302 94 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 Y_RNA.553-201ENST00000384670 102 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AL355379.1-201ENST00000405542 640 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.08□□□□□ -1.6
SMARCA1P28370 YWHAZP8-201ENST00000436935 731 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 MTND2P20-201ENST00000440805 661 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.08□□□□□ -1.6
SMARCA1P28370 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.08□□□□□ -1.6
SMARCA1P28370 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AC091965.2-201ENST00000512324 613 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.08□□□□□ -1.6
SMARCA1P28370 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.08□□□□□ -1.6
SMARCA1P28370 EIF5A2P1-201ENST00000564027 460 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 MTCYBP22-201ENST00000603788 447 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AP001521.1-201ENST00000609150 300 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC127502.3-201ENST00000636170 1206 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.08□□□□□ -1.6
SMARCA1P28370 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.08□□□□□ -1.6
SMARCA1P28370 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.08□□□□□ -1.6
SMARCA1P28370 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 AL592437.2-201ENST00000421655 2434 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 MTND5P24-201ENST00000438892 1767 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.08□□□□□ -1.6
SMARCA1P28370 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMARCA1P28370 AC022893.2-201ENST00000564832 3296 ntBASIC5.08□□□□□ -1.6
SMARCA1P28370 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SMARCA1P28370 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AL049555.1-201ENST00000562834 1933 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SMARCA1P28370 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SMARCA1P28370 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 OR5BR1P-201ENST00000524992 1330 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 RNU1-20P-201ENST00000363314 162 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 U3.4-201ENST00000363352 213 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 Y_RNA.302-201ENST00000364997 102 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 RNA5SP22-201ENST00000365393 109 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 Y_RNA.505-201ENST00000384489 102 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 MIR708-201ENST00000390708 88 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AL121978.1-201ENST00000402778 359 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 SNRPFP1-201ENST00000414761 252 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 MTCYBP38-201ENST00000417160 1123 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 Z99497.1-201ENST00000421282 135 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 CBX1P1-201ENST00000440184 427 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AL512326.1-201ENST00000443050 721 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 MTCO1P19-201ENST00000443487 500 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 PHBP16-201ENST00000446318 950 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SMARCA1P28370 ARPC3P2-201ENST00000457786 533 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 RN7SL817P-201ENST00000480777 288 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 OR4G11P-201ENST00000492842 939 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 SNX5P1-201ENST00000505757 1041 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 MTATP6P22-201ENST00000507369 598 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 SOD1P3-201ENST00000518682 454 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC134698.5-201ENST00000519444 336 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SMARCA1P28370 RFPL1S-203ENST00000539579 330 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.07□□□□□ -1.6
SMARCA1P28370 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms