Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MTCO1P52-201ENST00000433928 531 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A3P25940 AL590639.1-201ENST00000456484 337 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A3P25940 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.56□□□□□ -1.84
COL5A3P25940 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.56□□□□□ -1.84
COL5A3P25940 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 AC007424.1-203ENST00000554613 687 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
COL5A3P25940 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.56□□□□□ -1.84
COL5A3P25940 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.56□□□□□ -1.84
COL5A3P25940 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A3P25940 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A3P25940 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 MIR184-201ENST00000384962 84 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 AL356057.3-201ENST00000402607 340 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 AC009963.1-201ENST00000417265 157 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A3P25940 AC003982.1-202ENST00000469928 248 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.56□□□□□ -1.84
COL5A3P25940 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.56□□□□□ -1.84
COL5A3P25940 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.56□□□□□ -1.84
COL5A3P25940 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.55□□□□□ -1.84
COL5A3P25940 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL5A3P25940 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
COL5A3P25940 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.55□□□□□ -1.84
COL5A3P25940 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL5A3P25940 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
COL5A3P25940 AC046144.1-201ENST00000478559 1853 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.55□□□□□ -1.84
COL5A3P25940 U3.11-201ENST00000364476 212 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 SNORA70B-201ENST00000384210 135 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 MIR196B-201ENST00000384852 84 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.55□□□□□ -1.84
COL5A3P25940 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.55□□□□□ -1.84
COL5A3P25940 AC005351.1-201ENST00000511152 786 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A3P25940 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.55□□□□□ -1.84
COL5A3P25940 AL591516.1-201ENST00000611326 274 ntBASIC3.55□□□□□ -1.84
COL5A3P25940 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A3P25940 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.55□□□□□ -1.84
COL5A3P25940 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
COL5A3P25940 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A3P25940 RNA5SP289-201ENST00000362332 137 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 RPS7P13-201ENST00000413955 498 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 AC127526.1-201ENST00000417526 366 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 RPS26P40-201ENST00000435209 294 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A3P25940 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A3P25940 RNA5SP282-201ENST00000516355 108 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A3P25940 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A3P25940 AC087241.4-201ENST00000612441 480 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A3P25940 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A3P25940 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
COL5A3P25940 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A3P25940 DDX18P3-201ENST00000404856 2007 ntBASIC3.54□□□□□ -1.84
COL5A3P25940 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A3P25940 OR5AQ1P-203ENST00000641818 1529 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A3P25940 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
COL5A3P25940 AC006960.1-201ENST00000419980 153 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.53□□□□□ -1.84
COL5A3P25940 AC006539.3-201ENST00000454258 129 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 TRBV12-1-201ENST00000479785 344 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 YWHAEP4-201ENST00000505390 198 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.53□□□□□ -1.84
COL5A3P25940 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.53□□□□□ -1.84
COL5A3P25940 AC064859.1-201ENST00000624741 174 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.53□□□□□ -1.84
COL5A3P25940 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.53□□□□□ -1.84
COL5A3P25940 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.53□□□□□ -1.84
COL5A3P25940 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.53□□□□□ -1.84
COL5A3P25940 AC012020.1-201ENST00000624541 1728 ntBASIC3.53□□□□□ -1.84
COL5A3P25940 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A3P25940 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A3P25940 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
COL5A3P25940 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
COL5A3P25940 GTF2IP23-201ENST00000423746 351 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 RPL23AP4-201ENST00000427757 463 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 FTH1P6-201ENST00000430768 320 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 EEF1B2P7-201ENST00000451177 676 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 AC017037.2-201ENST00000513850 890 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.53□□□□□ -1.85
COL5A3P25940 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.53□□□□□ -1.85
COL5A3P25940 MIR6817-201ENST00000615588 66 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 AP001005.3-201ENST00000622049 129 ntBASIC3.53□□□□□ -1.85
COL5A3P25940 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
COL5A3P25940 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL5A3P25940 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms