Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AL121657.1-201ENST00000327215 531 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 RNU6-1257P-201ENST00000384625 110 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 SNORA40.4-201ENST00000390971 128 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 RPL23AP47-201ENST00000408017 460 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 RNA5SP146-201ENST00000410743 123 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC108078.3-201ENST00000502633 489 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC008427.1-201ENST00000503102 655 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 DYNLL1P6-201ENST00000503440 264 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC010625.1-201ENST00000511296 403 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC105914.1-201ENST00000511798 226 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AP001189.2-201ENST00000527320 189 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 AC231759.1-201ENST00000616455 597 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 XIST_intron.1-201ENST00000619444 68 ntBASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP4AQ9BY43 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC067945.1-201ENST00000342609 618 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RN7SKP167-201ENST00000411047 285 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RPS7P9-201ENST00000414704 586 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC007390.1-201ENST00000415722 356 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC104629.1-201ENST00000494226 508 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC004062.1-201ENST00000509926 645 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC006499.6-201ENST00000511169 607 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RN7SKP289-201ENST00000517244 295 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RN7SL600P-201ENST00000581811 299 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 AC011816.2-201ENST00000607089 556 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 RBM12B-AS1-201ENST00000623283 653 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 U6.98-201ENST00000637157 84 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 Z82217.1-201ENST00000625157 8149 ntBASIC5.34□□□□□ -1.55
CHMP4AQ9BY43 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CHMP4AQ9BY43 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 RNU6-1300P-201ENST00000391046 108 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 CYCSP45-201ENST00000402289 315 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AL356967.1-201ENST00000406305 431 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 MTHFD2P2-201ENST00000407725 247 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 TCEA1P2-201ENST00000420496 906 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC012065.2-201ENST00000421295 375 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 ARL4AP4-201ENST00000434170 518 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 PTGES3P1-201ENST00000439531 483 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC007537.2-201ENST00000472093 511 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AL136126.1-201ENST00000473603 402 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 RN7SKP21-201ENST00000516503 220 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AP003066.2-201ENST00000529375 555 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms