Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC103591.3-201ENST00000608684 209 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 AC011939.3-201ENST00000613686 466 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 AL158063.1-201ENST00000615349 536 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 AC090116.1-201ENST00000615679 446 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXA1P49639 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA1P49639 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.77□□□□□ -1.81
HOXA1P49639 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXA1P49639 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA1P49639 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA1P49639 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA1P49639 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA1P49639 AL390237.1-201ENST00000404226 1415 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA1P49639 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA1P49639 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA1P49639 PABPC1P6-201ENST00000445594 1829 ntBASIC3.77□□□□□ -1.81
HOXA1P49639 AC025031.4-201ENST00000621248 3271 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AL590763.1-201ENST00000398297 1545 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC025125.1-201ENST00000624743 1922 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 AL031119.1-201ENST00000404707 1879 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXA1P49639 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 Y_RNA.18-201ENST00000362461 102 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 RNU6-433P-201ENST00000363216 104 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 Y_RNA.201-201ENST00000364052 96 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 RNU6-1122P-201ENST00000384449 107 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AL590762.2-201ENST00000395798 571 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 RPS3AP26-201ENST00000398259 784 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 AL121978.1-201ENST00000402778 359 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC009237.5-201ENST00000414271 501 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA1P49639 AC244035.1-201ENST00000430042 390 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA1P49639 MTCYBP39-201ENST00000437562 491 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 PTMAP6-201ENST00000439110 327 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 EEF1E1P1-201ENST00000446998 430 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 TRGVB-201ENST00000453257 471 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA1P49639 RPL23AP56-201ENST00000460778 453 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 AC090142.1-201ENST00000465776 462 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC092757.1-201ENST00000467293 467 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 RPL7P47-201ENST00000497299 556 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 SNX5P1-201ENST00000505757 1041 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.76□□□□□ -1.81
HOXA1P49639 MTCYBP37-201ENST00000510642 1133 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC091965.2-201ENST00000512324 613 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 SNORD116-26-201ENST00000516006 96 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 RN7SKP66-201ENST00000516681 231 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 RN7SL802P-201ENST00000577858 299 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 KPNA2P3-201ENST00000584190 848 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC107982.3-201ENST00000584957 985 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA1P49639 AL031985.2-201ENST00000600955 480 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXA1P49639 AC020910.3-201ENST00000603701 874 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 MTCYBP22-201ENST00000603788 447 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 RN7SKP299-201ENST00000606679 301 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AL031775.1-201ENST00000607014 887 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AP001521.2-201ENST00000608772 546 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 FAM27B-201ENST00000610601 213 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC008121.2-201ENST00000614647 523 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC098679.4-201ENST00000624241 654 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC079228.1-201ENST00000624774 1049 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 CR381572.2-201ENST00000624852 397 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA1P49639 AC099063.3-201ENST00000642066 185 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC092104.1-201ENST00000497346 1441 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 AC073429.2-201ENST00000569694 1444 ntBASIC3.76□□□□□ -1.81
HOXA1P49639 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXA1P49639 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA1P49639 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 TNPO1P3-201ENST00000436471 2662 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms