Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX1P28360 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX1P28360 RPS15AP10-201ENST00000432472 382 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 REG1CP-206ENST00000447469 496 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC104073.1-201ENST00000451988 151 ntBASIC5.89□□□□□ -1.47
MSX1P28360 RN7SL552P-201ENST00000462094 276 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AL136126.1-201ENST00000473603 402 ntBASIC5.89□□□□□ -1.47
MSX1P28360 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
MSX1P28360 RNA5SP441-201ENST00000516809 88 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.89□□□□□ -1.47
MSX1P28360 FAM60DP-201ENST00000524174 632 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AP001858.2-201ENST00000536213 601 ntBASIC5.89□□□□□ -1.47
MSX1P28360 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX1P28360 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
MSX1P28360 RN7SL753P-201ENST00000581238 290 ntBASIC5.89□□□□□ -1.47
MSX1P28360 MIR3941-201ENST00000582572 103 ntBASIC5.89□□□□□ -1.47
MSX1P28360 SMIM12P1-201ENST00000603004 274 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC011626.1-201ENST00000604710 562 ntBASIC5.89□□□□□ -1.47
MSX1P28360 SNORD58B-201ENST00000607313 66 ntBASIC5.89□□□□□ -1.47
MSX1P28360 RN7SL261P-201ENST00000613441 282 ntBASIC5.89□□□□□ -1.47
MSX1P28360 MRPL57P1-201ENST00000621486 265 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC022400.9-201ENST00000623633 273 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.89□□□□□ -1.47
MSX1P28360 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AC027088.4-201ENST00000611559 1947 ntBASIC5.89□□□□□ -1.47
MSX1P28360 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 AC233263.6-201ENST00000631132 1963 ntBASIC5.89□□□□□ -1.47
MSX1P28360 AL592148.3-201ENST00000608771 2646 ntBASIC5.89□□□□□ -1.47
MSX1P28360 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX1P28360 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX1P28360 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 AL591848.4-201ENST00000567832 3472 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 PABPC1P8-201ENST00000452851 2086 ntBASIC5.88□□□□□ -1.47
MSX1P28360 Y_RNA.106-201ENST00000363189 100 ntBASIC5.88□□□□□ -1.47
MSX1P28360 RNA5SP77-201ENST00000365394 120 ntBASIC5.88□□□□□ -1.47
MSX1P28360 RNU5E-6P-201ENST00000365574 115 ntBASIC5.88□□□□□ -1.47
MSX1P28360 RNU6-1127P-201ENST00000384580 107 ntBASIC5.88□□□□□ -1.47
MSX1P28360 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 RNU6-387P-201ENST00000411331 105 ntBASIC5.88□□□□□ -1.47
MSX1P28360 BX682237.1-201ENST00000415016 335 ntBASIC5.88□□□□□ -1.47
MSX1P28360 GJA6P-201ENST00000415117 1042 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 AC007679.3-201ENST00000434035 414 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 RPL21P2-201ENST00000440049 481 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 AL392103.1-201ENST00000447000 198 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.88□□□□□ -1.47
MSX1P28360 RPL21P8-201ENST00000465083 535 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 AC068522.1-201ENST00000482895 345 ntBASIC5.88□□□□□ -1.47
MSX1P28360 CR383656.1-201ENST00000484916 377 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC005912.1-201ENST00000495392 255 ntBASIC5.88□□□□□ -1.47
MSX1P28360 GZMAP1-201ENST00000503054 631 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC018645.1-201ENST00000505003 109 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 RNU6-120P-201ENST00000516077 103 ntBASIC5.88□□□□□ -1.47
MSX1P28360 RNU6-1023P-201ENST00000516137 106 ntBASIC5.88□□□□□ -1.47
MSX1P28360 SCARNA16.2-201ENST00000516520 172 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 MIR4301-201ENST00000577203 66 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX1P28360 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.88□□□□□ -1.47
MSX1P28360 MIR5692C1-201ENST00000585309 91 ntBASIC5.88□□□□□ -1.47
MSX1P28360 AC067852.5-201ENST00000589299 310 ntBASIC5.88□□□□□ -1.47
MSX1P28360 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
MSX1P28360 Z98751.3-201ENST00000604447 521 ntBASIC5.88□□□□□ -1.47
MSX1P28360 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.88□□□□□ -1.47
MSX1P28360 AL021918.2-201ENST00000613415 194 ntBASIC5.88□□□□□ -1.47
MSX1P28360 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms