Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL356968.1-201ENST00000416622 474 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 GLRXP1-201ENST00000423261 334 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 TRIAP1P1-201ENST00000427062 225 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL160175.1-201ENST00000428124 247 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 Z85994.2-201ENST00000434327 452 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC073063.1-201ENST00000434352 607 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 RPS7P5-201ENST00000441482 581 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 NPM1P49-201ENST00000448027 714 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 CYCSP35-201ENST00000451978 304 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC073387.1-201ENST00000453261 709 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 RPL37P3-201ENST00000456825 293 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC096992.1-201ENST00000459808 709 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC023598.1-201ENST00000472521 361 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 ATG10-AS1-201ENST00000504846 648 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 RPL12P22-201ENST00000519073 490 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AP000926.4-201ENST00000527351 454 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL049870.4-201ENST00000555741 486 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 OR4H12P-201ENST00000556269 907 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC008507.1-201ENST00000587506 734 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC009303.3-201ENST00000591103 736 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC009948.4-201ENST00000604692 675 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC016877.3-201ENST00000606778 504 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 MIR6864-201ENST00000617935 70 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC048347.1-201ENST00000624621 427 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL645937.1-201ENST00000641739 1652 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC032011.1-201ENST00000611703 1549 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 RNA5SP189-201ENST00000364920 115 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 RNU6-891P-201ENST00000384280 111 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AL590290.1-201ENST00000405336 380 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 RNA5SP44-201ENST00000410446 133 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC126124.2-201ENST00000413542 321 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 RPS7P13-201ENST00000413955 498 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 BX842559.1-201ENST00000419615 532 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 RPL23AP82-202ENST00000427528 469 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AP000907.1-201ENST00000428428 510 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 B3GNT2P1-201ENST00000434960 952 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 RPL29P29-201ENST00000448725 423 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC097262.1-201ENST00000452559 548 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 U3.44-201ENST00000458938 192 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 CENPBD1P1-201ENST00000464061 469 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 RPL7P5-201ENST00000471472 736 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC025518.1-201ENST00000479856 347 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC005726.1-201ENST00000494679 427 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 HMGN1P15-201ENST00000513870 295 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC107934.2-201ENST00000518653 310 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 IGKV2-36-201ENST00000519999 223 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 OR5B10P-201ENST00000532869 642 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 CENPUP2-201ENST00000555897 1186 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 MIR3922-201ENST00000585192 84 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC006116.10-201ENST00000591836 581 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 ZNF92P3-201ENST00000596594 954 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 SRGNP1-201ENST00000603392 451 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC243312.2-201ENST00000623340 601 ntBASIC2.59□□□□□ -1.99
HLA-DMBP28068 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC2.59□□□□□ -1.99
HLA-DMBP28068 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HLA-DMBP28068 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.59□□□□□ -2
HLA-DMBP28068 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HLA-DMBP28068 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HLA-DMBP28068 AC118273.1-201ENST00000525324 3006 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms