Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC068305.1-201ENST00000497406 726 ntBASIC3.73□□□□□ -1.81
SDC3O75056 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.73□□□□□ -1.81
SDC3O75056 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC3O75056 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AC112206.4-201ENST00000515142 405 ntBASIC3.73□□□□□ -1.81
SDC3O75056 PRELID3BP4-201ENST00000515476 571 ntBASIC3.73□□□□□ -1.81
SDC3O75056 RN7SKP18-201ENST00000516005 275 ntBASIC3.73□□□□□ -1.81
SDC3O75056 RNU4-60P-201ENST00000517239 135 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC3O75056 GNRHR2P1-201ENST00000555315 631 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.73□□□□□ -1.81
SDC3O75056 DNAJC19P3-201ENST00000594491 331 ntBASIC3.73□□□□□ -1.81
SDC3O75056 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.73□□□□□ -1.81
SDC3O75056 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC3O75056 AP000255.1-201ENST00000610276 676 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC096577.2-201ENST00000611455 153 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC022079.2-201ENST00000619739 566 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AL138960.2-201ENST00000625145 535 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC119674.1-207ENST00000641355 633 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC011978.2-201ENST00000569835 2054 ntBASIC3.73□□□□□ -1.81
SDC3O75056 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC3O75056 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
SDC3O75056 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
SDC3O75056 NOL8P1-201ENST00000508336 3529 ntBASIC3.72□□□□□ -1.81
SDC3O75056 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.72□□□□□ -1.81
SDC3O75056 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC3O75056 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 RNU6-525P-201ENST00000363685 104 ntBASIC3.72□□□□□ -1.81
SDC3O75056 UBE2V1P9-201ENST00000414760 368 ntBASIC3.72□□□□□ -1.81
SDC3O75056 AC245052.5-201ENST00000416320 649 ntBASIC3.72□□□□□ -1.81
SDC3O75056 RPL36P19-201ENST00000430744 301 ntBASIC3.72□□□□□ -1.81
SDC3O75056 Z77249.1-201ENST00000444622 1175 ntBASIC3.72□□□□□ -1.81
SDC3O75056 AL929288.2-201ENST00000446368 407 ntBASIC3.72□□□□□ -1.81
SDC3O75056 OR51B8P-201ENST00000449892 769 ntBASIC3.72□□□□□ -1.81
SDC3O75056 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC3O75056 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC3O75056 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SDC3O75056 AC106707.2-201ENST00000484182 374 ntBASIC3.72□□□□□ -1.81
SDC3O75056 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC3O75056 RNU6-202P-201ENST00000515998 96 ntBASIC3.72□□□□□ -1.81
SDC3O75056 HMGB1P1-201ENST00000522557 636 ntBASIC3.72□□□□□ -1.81
SDC3O75056 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 AC068339.2-201ENST00000534395 618 ntBASIC3.72□□□□□ -1.81
SDC3O75056 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC3O75056 EIF5A2P1-201ENST00000564027 460 ntBASIC3.72□□□□□ -1.81
SDC3O75056 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC3O75056 AC023824.3-201ENST00000569003 562 ntBASIC3.72□□□□□ -1.81
SDC3O75056 MIR4789-201ENST00000577469 82 ntBASIC3.72□□□□□ -1.81
SDC3O75056 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC3O75056 MIR5187-201ENST00000583479 76 ntBASIC3.72□□□□□ -1.81
SDC3O75056 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.72□□□□□ -1.81
SDC3O75056 AC133794.1-201ENST00000602731 914 ntBASIC3.72□□□□□ -1.81
SDC3O75056 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
SDC3O75056 AL356118.1-201ENST00000635272 1078 ntBASIC3.72□□□□□ -1.81
SDC3O75056 U6.105-201ENST00000637379 88 ntBASIC3.72□□□□□ -1.81
SDC3O75056 AC138649.5-201ENST00000637456 137 ntBASIC3.72□□□□□ -1.81
SDC3O75056 MTND5P28-201ENST00000438005 1594 ntBASIC3.72□□□□□ -1.81
SDC3O75056 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SDC3O75056 AL136520.1-201ENST00000600311 1322 ntBASIC3.71□□□□□ -1.81
SDC3O75056 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
SDC3O75056 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
SDC3O75056 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 AC007685.1-201ENST00000329806 452 ntBASIC3.71□□□□□ -1.82
SDC3O75056 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.71□□□□□ -1.82
SDC3O75056 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 MIR183-201ENST00000384958 110 ntBASIC3.71□□□□□ -1.82
SDC3O75056 MIR34B-201ENST00000385076 84 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AL355379.1-201ENST00000405542 640 ntBASIC3.71□□□□□ -1.82
SDC3O75056 RNU6-77P-201ENST00000410554 91 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC073264.1-201ENST00000411508 416 ntBASIC3.71□□□□□ -1.82
SDC3O75056 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.71□□□□□ -1.82
SDC3O75056 TCEA1P2-201ENST00000420496 906 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC013262.1-201ENST00000426710 252 ntBASIC3.71□□□□□ -1.82
SDC3O75056 RPS7P2-201ENST00000435134 607 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC3O75056 AF228730.2-201ENST00000438784 848 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC000041.1-201ENST00000439655 175 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC3O75056 RPS3AP12-201ENST00000443616 753 ntBASIC3.71□□□□□ -1.82
SDC3O75056 SETD6P1-201ENST00000444575 317 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC005002.1-201ENST00000447458 540 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC3O75056 CDC42P1-201ENST00000456658 548 ntBASIC3.71□□□□□ -1.82
SDC3O75056 UBDP1-202ENST00000457888 382 ntBASIC3.71□□□□□ -1.82
SDC3O75056 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC3O75056 RN7SL293P-201ENST00000481765 281 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC3O75056 NAMPTP2-201ENST00000505629 1115 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC025554.1-201ENST00000505641 188 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC074250.1-201ENST00000511117 192 ntBASIC3.71□□□□□ -1.82
SDC3O75056 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms