Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC008758.3-201ENST00000507003 1829 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 RNA5SP242-201ENST00000364171 118 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 RNU1-115P-201ENST00000365329 160 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 SNORA63.7-201ENST00000365579 123 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 SNORD51-201ENST00000384320 80 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 U3.29-201ENST00000391296 212 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AL603908.1-201ENST00000406098 201 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AL583834.1-201ENST00000406943 343 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 RNU2-21P-201ENST00000410368 188 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC023141.3-201ENST00000436698 278 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 DNAJC19P5-201ENST00000443295 316 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC010655.3-201ENST00000478818 450 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AF213884.1-201ENST00000488102 463 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AP002812.1-201ENST00000495378 474 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC135721.1-201ENST00000497954 479 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC090115.3-201ENST00000553218 849 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC007566.2-201ENST00000603642 413 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AL513218.1-201ENST00000606527 391 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC009570.1-201ENST00000609599 745 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AP001784.1-201ENST00000624107 428 ntBASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.65□□□□□ -1.34
LIMD1Q9UGP4 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 AC022034.1-201ENST00000512867 2156 ntBASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 AC093278.2-201ENST00000564956 2485 ntBASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
LIMD1Q9UGP4 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL442128.2-201ENST00000620246 1824 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 RNA5SP477-201ENST00000362639 119 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 RNU6-99P-201ENST00000364721 107 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 SNRPEP6-201ENST00000407465 277 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 RNU6-1050P-201ENST00000410388 107 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 DPH3P2-201ENST00000422618 250 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL591212.2-201ENST00000433923 257 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 DYNLL1P5-201ENST00000467158 270 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 KHDC1P1-201ENST00000511053 508 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 RNU6-307P-201ENST00000516743 106 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC105031.1-201ENST00000518550 476 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 OR8R1P-201ENST00000543943 764 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 FXNP1-201ENST00000555153 337 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC007956.1-201ENST00000555623 542 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL121576.1-201ENST00000556055 276 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC113195.1-201ENST00000579952 141 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AL022394.1-201ENST00000606979 292 ntBASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.64□□□□□ -1.35
LIMD1Q9UGP4 AC009229.3-201ENST00000608056 282 ntBASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms