Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 HMGB1P5-201ENST00000255320 642 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RNA5SP335-201ENST00000363817 110 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 SNORA33.2-201ENST00000365413 134 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.401-201ENST00000383965 117 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC025750.1-201ENST00000399891 379 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AL603766.1-201ENST00000407763 664 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC023512.1-201ENST00000444513 499 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC006480.1-201ENST00000449887 378 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 DNAJB5P1-201ENST00000454004 806 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 HSPE1P22-201ENST00000456856 327 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RN7SL717P-201ENST00000478343 297 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RPL35P6-201ENST00000490024 372 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC114981.1-201ENST00000503897 678 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 RNA5SP464-201ENST00000516251 108 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC105031.1-201ENST00000518550 476 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC239860.2-201ENST00000525886 270 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC110588.1-201ENST00000559699 137 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC009977.1-201ENST00000586015 570 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AL589674.2-201ENST00000604304 337 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC113139.1-201ENST00000605049 239 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC074140.1-201ENST00000621617 208 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AC139792.3-201ENST00000623525 224 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 CYP1D1P-201ENST00000416662 1433 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AL022322.2-201ENST00000624072 20397 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 ENSAP3-201ENST00000312710 333 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RNU6-249P-201ENST00000363016 102 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.97-201ENST00000363094 102 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RNY3P3-201ENST00000363816 102 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.202-201ENST00000364083 110 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RNU6-474P-201ENST00000384243 107 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RNU6-784P-201ENST00000384330 106 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 RNU6-1105P-201ENST00000384774 107 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AL603908.1-201ENST00000406098 201 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC073136.2-201ENST00000417282 849 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 Z98949.2-201ENST00000440996 144 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.632-201ENST00000459189 102 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC022878.1-201ENST00000530684 149 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC009597.2-201ENST00000604659 592 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 C2orf27A-204ENST00000623058 969 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 TPTEP1-208ENST00000636884 213 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 AC083843.2-201ENST00000568248 6253 ntBASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC39Q9UFE4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms