Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC093249.4-201ENST00000564755 259 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC011477.5-201ENST00000586571 259 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AL390816.3-201ENST00000604527 1066 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC068276.1-201ENST00000605793 379 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC083809.1-201ENST00000615051 472 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC119744.1-201ENST00000454746 1715 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 MAPK10-303ENST00000641324 3959 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 MFSD8-216ENST00000641147 4009 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC107982.1-201ENST00000507171 1300 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 PNPT1P2-201ENST00000456768 2050 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 CDR1-202ENST00000625883 1485 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL512646.1-201ENST00000269395 1077 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RNU6-582P-201ENST00000362989 107 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RN7SKP44-201ENST00000363602 316 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 Y_RNA.302-201ENST00000364997 102 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL133264.1-201ENST00000407157 562 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL139098.1-201ENST00000407291 389 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 MIR1284-201ENST00000408337 120 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 U3.35-201ENST00000408405 208 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 FCF1P9-201ENST00000412546 282 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 E2F6P2-201ENST00000420708 748 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL513175.1-201ENST00000431492 780 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 NMNAT1P2-201ENST00000435192 860 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 BMI1P1-201ENST00000445879 941 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RPL7P59-201ENST00000447700 943 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 SNRPGP9-201ENST00000456025 225 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RPS23P7-201ENST00000466210 444 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC109471.1-201ENST00000511631 612 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RNU6-885P-201ENST00000516607 104 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RNU6-405P-201ENST00000516637 110 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RNU6-1261P-201ENST00000517194 104 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC008562.1-201ENST00000521763 330 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 HIGD1AP6-201ENST00000521833 279 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AP006289.1-201ENST00000538089 277 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 OR6C7P-201ENST00000547875 934 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 HMGB2P1-201ENST00000591146 634 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC020914.6-201ENST00000594327 272 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC025946.2-201ENST00000603398 234 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC008745.1-201ENST00000604064 271 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC116165.2-201ENST00000616705 206 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 AC022306.2-201ENST00000617563 647 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.78□□□□□ -1.64
DKK3Q9UBP4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
DKK3Q9UBP4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.78□□□□□ -1.65
DKK3Q9UBP4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC125257.1-201ENST00000560400 2930 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RPL32P3-201ENST00000359025 275 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RNU6-492P-201ENST00000363035 104 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RN7SKP227-201ENST00000364445 330 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms