Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF540Q8NDQ6 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF540Q8NDQ6 SGO1P1-201ENST00000603525 1447 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC117529.2-201ENST00000512159 2068 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 UBE3AP2-201ENST00000429033 2259 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 MIR383-201ENST00000362257 73 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 MIR331-201ENST00000362302 94 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AP002784.2-201ENST00000397300 549 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL583835.1-201ENST00000399570 407 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RHEBP3-201ENST00000411920 351 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL049610.1-201ENST00000423374 372 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RPS3AP54-201ENST00000435535 734 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 HSFY3P-201ENST00000444242 1191 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 MTCO3P20-201ENST00000454926 688 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 GTF2IP12-201ENST00000456547 356 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RPL7P19-201ENST00000469948 618 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RPS4XP6-201ENST00000477670 797 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 SETP6-201ENST00000479329 568 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RPL35P6-201ENST00000490024 372 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC004069.2-201ENST00000505438 1114 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-416P-201ENST00000516265 103 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 RNU7-143P-201ENST00000516781 65 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC012417.1-201ENST00000582307 1039 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC069366.1-201ENST00000583159 838 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL451044.1-201ENST00000604867 238 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AL451086.1-201ENST00000605596 223 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 AC024941.1-201ENST00000612250 334 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 MTND2P41-201ENST00000637599 773 ntBASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
ZNF540Q8NDQ6 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-1249P-201ENST00000363237 111 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 MIR16-1-201ENST00000385271 89 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AL157831.1-201ENST00000426134 473 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC017099.1-201ENST00000448261 1028 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AL353718.1-201ENST00000451028 517 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC104073.1-201ENST00000451988 151 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 TRBV26-201ENST00000456572 344 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 OR9M1P-201ENST00000459641 921 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 RPS7P7-201ENST00000463499 571 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 RN7SL271P-201ENST00000487601 295 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC119751.1-201ENST00000513357 765 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 IGHV3-76-201ENST00000522465 295 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC019227.1-201ENST00000526902 510 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC010198.2-201ENST00000550612 259 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AGGF1P6-201ENST00000569213 976 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AL109653.1-201ENST00000603091 248 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 VN1R9P-201ENST00000614184 867 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 ZYXP1-201ENST00000617638 118 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 MIR8059-201ENST00000620427 81 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC092628.2-201ENST00000622492 339 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC106730.3-201ENST00000624568 641 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 MIR492-201ENST00000638676 116 ntBASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms