Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 MTND4P26-201ENST00000415971 1359 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PRKDCP78527 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 RNA5SP213-201ENST00000391031 106 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 MTCYBP14-201ENST00000457471 715 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 RN7SL93P-201ENST00000463035 293 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 RPL23AP71-201ENST00000470966 469 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AC069499.1-201ENST00000489433 509 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AC005921.1-201ENST00000510589 286 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 NTAN1P1-201ENST00000603150 646 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC2.1□□□□□ -2.07
PRKDCP78527 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 Y_RNA.355-201ENST00000365462 98 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AC104297.1-201ENST00000393779 870 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AL160275.2-201ENST00000412010 394 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AC048351.1-201ENST00000420064 602 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC2.1□□□□□ -2.07
PRKDCP78527 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.1□□□□□ -2.07
PRKDCP78527 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 AP002088.1-201ENST00000382740 395 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 HMGB1P15-201ENST00000453854 435 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 SETP4-201ENST00000455717 868 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 AC017071.1-201ENST00000564407 2204 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.1□□□□□ -2.07
PRKDCP78527 OR7A8P-201ENST00000595427 913 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.1□□□□□ -2.07
PRKDCP78527 AC015813.4-201ENST00000610469 179 ntBASIC2.1□□□□□ -2.07
PRKDCP78527 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.1□□□□□ -2.07
PRKDCP78527 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
PRKDCP78527 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
PRKDCP78527 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
PRKDCP78527 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
PRKDCP78527 Y_RNA.140-201ENST00000363474 103 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.09□□□□□ -2.07
PRKDCP78527 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
PRKDCP78527 ELOCP18-201ENST00000434209 337 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.09□□□□□ -2.07
PRKDCP78527 AC117522.3-201ENST00000507974 584 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.09□□□□□ -2.07
PRKDCP78527 AP000867.2-201ENST00000532468 320 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.09□□□□□ -2.07
PRKDCP78527 DPRXP4-201ENST00000578053 568 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC079228.1-201ENST00000624774 1049 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC000403.1-201ENST00000613696 3585 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 MTND5P24-201ENST00000438892 1767 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
PRKDCP78527 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
PRKDCP78527 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 MTCO1P51-201ENST00000427672 1060 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 FTH1P11-201ENST00000517577 551 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AC015712.3-201ENST00000559380 164 ntBASIC2.09□□□□□ -2.07
PRKDCP78527 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.09□□□□□ -2.07
PRKDCP78527 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.09□□□□□ -2.07
PRKDCP78527 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
PRKDCP78527 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.09□□□□□ -2.08
PRKDCP78527 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
PRKDCP78527 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
PRKDCP78527 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
PRKDCP78527 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
PRKDCP78527 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.09□□□□□ -2.08
PRKDCP78527 AC004972.1-201ENST00000623934 2209 ntBASIC2.09□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms