Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 OR7L1P-201ENST00000456181 380 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 MTCYBP14-201ENST00000457471 715 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.42□□□□□ -2.02
FOXA3P55318 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.42□□□□□ -2.02
FOXA3P55318 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC2.42□□□□□ -2.02
FOXA3P55318 C1GALT1P3-201ENST00000522049 819 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.42□□□□□ -2.02
FOXA3P55318 AC239860.2-201ENST00000525886 270 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 CASP1-216ENST00000534497 825 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA3P55318 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.42□□□□□ -2.02
FOXA3P55318 AC010653.1-201ENST00000571108 881 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 AC090616.5-202ENST00000582111 297 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AC078899.3-201ENST00000599065 212 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AC069304.3-201ENST00000603938 1084 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 U3.45-201ENST00000607547 219 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 MIR6820-201ENST00000611508 62 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 MIR6716-201ENST00000613413 80 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 MIR7973-1-201ENST00000614683 76 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 PACRG-211ENST00000621363 360 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA3P55318 AC073348.1-201ENST00000623002 331 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 MIR7641-1-201ENST00000627518 61 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AC084035.1-201ENST00000634543 607 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 AC092435.3-201ENST00000565538 3654 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA3P55318 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA3P55318 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.42□□□□□ -2.02
FOXA3P55318 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA3P55318 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA3P55318 RNU1-70P-201ENST00000362618 164 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA3P55318 HSPE1P1-201ENST00000421494 318 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA3P55318 AC093151.1-201ENST00000427711 313 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 CKS1BP5-201ENST00000434172 273 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA3P55318 AC068724.1-201ENST00000487100 792 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA3P55318 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.41□□□□□ -2.02
FOXA3P55318 FCF1P8-201ENST00000510322 597 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA3P55318 SNORD59.2-201ENST00000516873 68 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA3P55318 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA3P55318 AC005476.1-201ENST00000554427 397 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.41□□□□□ -2.02
FOXA3P55318 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA3P55318 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 AC015726.3-201ENST00000624501 418 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA3P55318 AL392088.2-201ENST00000637607 285 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 AL161431.1-201ENST00000618966 4205 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA3P55318 DDX6P1-205ENST00000441966 1436 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 AF117829.1-206ENST00000621883 3802 ntBASIC2.41□□□□□ -2.02
FOXA3P55318 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
FOXA3P55318 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
FOXA3P55318 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
FOXA3P55318 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.4□□□□□ -2.02
FOXA3P55318 AC011978.2-201ENST00000569835 2054 ntBASIC2.4□□□□□ -2.02
FOXA3P55318 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA3P55318 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA3P55318 RPL23AP57-201ENST00000332361 466 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA3P55318 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA3P55318 RNU6-167P-201ENST00000384292 106 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AL590290.1-201ENST00000405336 380 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA3P55318 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA3P55318 CYCSP4-201ENST00000429682 331 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AC104332.2-201ENST00000429959 156 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 RPL23AP33-201ENST00000442301 452 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA3P55318 AC114755.5-201ENST00000447760 831 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA3P55318 RPL5P13-201ENST00000462840 709 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 CDH12P2-201ENST00000504393 298 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA3P55318 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA3P55318 AC010285.3-201ENST00000511668 676 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 CDH12P4-201ENST00000517835 295 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 CDH12P3-201ENST00000517935 295 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 CDH12P1-201ENST00000518435 295 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA3P55318 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA3P55318 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.4□□□□□ -2.03
FOXA3P55318 AL157394.1-201ENST00000562983 1224 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AC053481.4-201ENST00000583164 216 ntBASIC2.4□□□□□ -2.03
FOXA3P55318 AC115085.1-201ENST00000588924 229 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms