Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL136126.1-201ENST00000473603 402 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AC025181.1-201ENST00000477507 416 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA9P31269 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA9P31269 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA9P31269 PHBP14-201ENST00000512887 367 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 RNU6-889P-201ENST00000517189 103 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA9P31269 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA9P31269 MTND5P21-201ENST00000531961 522 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA9P31269 UBE2NP1-201ENST00000545592 458 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA9P31269 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA9P31269 MIR5680-201ENST00000577577 84 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 MIR5004-201ENST00000579078 107 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA9P31269 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA9P31269 CKS1BP3-201ENST00000600888 237 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AC018754.1-201ENST00000607486 925 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 AL162233.1-201ENST00000620014 944 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 MIR4278-201ENST00000636094 69 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HOXA9P31269 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA9P31269 AC006504.1-201ENST00000562493 3666 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA9P31269 AC007656.2-201ENST00000624902 4547 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA9P31269 AL645937.1-201ENST00000641739 1652 ntBASIC3.62□□□□□ -1.83
HOXA9P31269 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA9P31269 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 AP001148.1-201ENST00000624124 2359 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 Y_RNA.111-201ENST00000363248 100 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 RNA5SP42-201ENST00000364278 115 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA9P31269 RNU6-40P-201ENST00000384254 107 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 SNORA48.2-201ENST00000390926 124 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 HSPE1P8-201ENST00000406997 288 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 RPL30P2-201ENST00000414021 291 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA9P31269 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 MTCO3P16-201ENST00000454456 754 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA9P31269 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 AC021087.2-201ENST00000504656 1203 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 MTATP6P22-201ENST00000507369 598 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 ACTR6P1-201ENST00000514311 1104 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC034244.2-201ENST00000514668 858 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA9P31269 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA9P31269 AC008489.1-201ENST00000524271 483 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA9P31269 AL121576.1-201ENST00000556055 276 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 MIR4276-201ENST00000584832 70 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA9P31269 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA9P31269 AL606834.2-201ENST00000602954 668 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 RNA5SP108-201ENST00000605921 117 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA9P31269 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXA9P31269 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA9P31269 HPVC1-201ENST00000629899 1198 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA9P31269 RPS4XP5-202ENST00000449995 1334 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 DDX6P1-205ENST00000441966 1436 ntBASIC3.61□□□□□ -1.83
HOXA9P31269 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA9P31269 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.6□□□□□ -1.83
HOXA9P31269 MIR153-1-201ENST00000384914 90 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 CCNB2P1-201ENST00000399411 1150 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 SNORA11C-201ENST00000408532 129 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 USP9YP19-201ENST00000412165 485 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 BX323014.1-201ENST00000412876 237 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA9P31269 MOB1AP1-201ENST00000430903 535 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 MTND4LP7-201ENST00000431728 294 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC006028.1-201ENST00000438379 402 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 MTND5P8-201ENST00000449817 1083 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.6□□□□□ -1.83
HOXA9P31269 MTCO3P20-201ENST00000454926 688 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms