Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A5P29400 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A5P29400 SETP15-201ENST00000412724 337 ntBASIC3.46□□□□□ -1.85
COL4A5P29400 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A5P29400 BX679664.1-201ENST00000434429 253 ntBASIC3.46□□□□□ -1.85
COL4A5P29400 MRPS33P4-201ENST00000434892 317 ntBASIC3.46□□□□□ -1.85
COL4A5P29400 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.46□□□□□ -1.85
COL4A5P29400 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A5P29400 HMGB1P19-201ENST00000517578 577 ntBASIC3.46□□□□□ -1.85
COL4A5P29400 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A5P29400 AC241377.1-201ENST00000619797 406 ntBASIC3.46□□□□□ -1.85
COL4A5P29400 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 AC009313.2-201ENST00000417893 1941 ntBASIC3.46□□□□□ -1.86
COL4A5P29400 AC012078.1-201ENST00000405035 1646 ntBASIC3.46□□□□□ -1.86
COL4A5P29400 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 SNORA70B-201ENST00000384210 135 ntBASIC3.46□□□□□ -1.86
COL4A5P29400 MIR9-1-201ENST00000385198 89 ntBASIC3.46□□□□□ -1.86
COL4A5P29400 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A5P29400 AP002884.2-201ENST00000471647 395 ntBASIC3.46□□□□□ -1.86
COL4A5P29400 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A5P29400 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.46□□□□□ -1.86
COL4A5P29400 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL4A5P29400 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A5P29400 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A5P29400 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
COL4A5P29400 AC005332.5-201ENST00000591222 2919 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A5P29400 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A5P29400 MIR196B-201ENST00000384852 84 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AL138827.1-201ENST00000402666 306 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A5P29400 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A5P29400 RPL7L1P1-201ENST00000448259 785 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AL162389.1-201ENST00000449233 177 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A5P29400 AC108078.3-201ENST00000502633 489 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 OR5H3P-201ENST00000502817 919 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AC011602.1-201ENST00000546484 331 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AC116158.1-201ENST00000560231 2129 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A5P29400 AC026790.2-201ENST00000606282 430 ntBASIC3.45□□□□□ -1.86
COL4A5P29400 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A5P29400 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A5P29400 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A5P29400 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A5P29400 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A5P29400 AL356057.3-201ENST00000402607 340 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 RNA5SP21-201ENST00000410917 96 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 RNA5SP247-201ENST00000411181 105 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 RPL29P29-201ENST00000448725 423 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 AC008413.1-201ENST00000511864 177 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 AP000916.1-201ENST00000533869 835 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A5P29400 MIR7111-201ENST00000619751 72 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 AC073476.4-201ENST00000628409 72 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A5P29400 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A5P29400 AL356489.2-201ENST00000566968 3528 ntBASIC3.44□□□□□ -1.86
COL4A5P29400 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A5P29400 AL139039.1-201ENST00000401900 692 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A5P29400 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A5P29400 RPS17P11-201ENST00000474297 293 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 ARL2BPP6-201ENST00000512757 439 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.43□□□□□ -1.86
COL4A5P29400 AC007954.1-201ENST00000554198 494 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 MIR6817-201ENST00000615588 66 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 AC019080.5-201ENST00000624891 757 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A5P29400 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.86
COL4A5P29400 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL4A5P29400 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A5P29400 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
COL4A5P29400 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A5P29400 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A5P29400 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A5P29400 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A5P29400 AC233981.1-201ENST00000423224 461 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 LDHBP3-201ENST00000514909 822 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.43□□□□□ -1.86
COL4A5P29400 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A5P29400 AC132825.8-201ENST00000640783 297 ntBASIC3.43□□□□□ -1.86
COL4A5P29400 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A5P29400 AL049555.1-201ENST00000562834 1933 ntBASIC3.42□□□□□ -1.86
COL4A5P29400 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A5P29400 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms