Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC5.6□□□□□ -1.51
COL8A1P27658 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL8A1P27658 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 CUBNP3-201ENST00000457461 1784 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 IGKV7-3-201ENST00000357453 298 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AL121886.1-201ENST00000358609 435 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 MIR335-201ENST00000362173 94 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 Y_RNA.2-201ENST00000362330 96 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 Y_RNA.65-201ENST00000362846 100 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 RN7SKP160-201ENST00000363804 340 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 RNU6-128P-201ENST00000383976 107 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 RNU6-641P-201ENST00000384006 107 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 Y_RNA.526-201ENST00000384572 110 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 RPS17P17-201ENST00000419392 409 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 BX323845.3-201ENST00000428215 527 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 USP9YP30-201ENST00000430729 455 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 RPL23AP12-201ENST00000467573 473 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC021205.1-201ENST00000468797 348 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC087879.1-201ENST00000474343 374 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 RPL21P93-201ENST00000480465 489 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 RNA5SP34-201ENST00000516887 130 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 CBX3P4-201ENST00000538909 354 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.59□□□□□ -1.51
COL8A1P27658 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC090751.1-201ENST00000566966 267 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AP003115.1-201ENST00000569849 463 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 AL031320.1-201ENST00000604177 357 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 AC011155.2-201ENST00000623202 216 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 U6.114-201ENST00000636407 96 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC112255.1-201ENST00000624070 2493 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 AC007993.1-201ENST00000621298 2430 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL8A1P27658 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
COL8A1P27658 MAPK10-383ENST00000642032 3390 ntBASIC5.59□□□□□ -1.51
COL8A1P27658 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL8A1P27658 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
COL8A1P27658 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL8A1P27658 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL8A1P27658 AC127070.3-201ENST00000503695 3263 ntBASIC5.59□□□□□ -1.52
COL8A1P27658 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.59□□□□□ -1.52
COL8A1P27658 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL8A1P27658 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL8A1P27658 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL8A1P27658 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 DHX40P1-201ENST00000588725 1412 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 C4BPAP1-201ENST00000415474 1893 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 AL161781.1-201ENST00000354277 403 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 Y_RNA.352-201ENST00000365439 102 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 SNORA70-201ENST00000384436 135 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 Y_RNA.577-201ENST00000384794 101 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL8A1P27658 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms