Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC4P09017 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC4P09017 CEP170P1-201ENST00000502249 4587 ntBASIC3.48□□□□□ -1.85
HOXC4P09017 NMD3P1-201ENST00000439704 1488 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 DCAF13P3-201ENST00000561147 1334 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 DDX6P1-205ENST00000441966 1436 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 GTF2H2B-203ENST00000508065 1432 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 MIR208A-201ENST00000362287 71 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 SNORA70.4-201ENST00000365509 134 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 RNU6-40P-201ENST00000384254 107 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 AL356057.1-202ENST00000402263 756 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 DBIP2-201ENST00000419076 262 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC005019.1-201ENST00000436455 431 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 RPL23AP62-201ENST00000463396 453 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 RPL7P49-201ENST00000471402 708 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXC4P09017 SETP14-201ENST00000497538 873 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC025459.1-201ENST00000504072 156 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC111193.1-201ENST00000504097 155 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 HMGB1P46-201ENST00000520062 610 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXC4P09017 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC4P09017 AL158211.1-201ENST00000566763 763 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC4P09017 MIR5186-201ENST00000577504 120 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 RN7SL339P-201ENST00000580597 296 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 MIR4760-201ENST00000585040 80 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXC4P09017 BNIP3P40-201ENST00000596017 556 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 BNIP3P31-201ENST00000604515 566 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 AC008121.2-201ENST00000614647 523 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 AC009269.6-201ENST00000621778 588 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 AC138393.1-206ENST00000540997 1886 ntBASIC3.47□□□□□ -1.85
HOXC4P09017 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC4P09017 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC4P09017 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
HOXC4P09017 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXC4P09017 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC4P09017 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXC4P09017 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXC4P09017 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC4P09017 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC4P09017 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXC4P09017 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC4P09017 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXC4P09017 SNORD17-201ENST00000390930 237 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AC004022.2-201ENST00000413824 193 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AC068533.1-201ENST00000418542 415 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AC114814.2-201ENST00000419195 485 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC4P09017 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC4P09017 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 ELOCP11-201ENST00000436690 332 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXC4P09017 RNF2P1-201ENST00000442955 1010 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 ELOCP16-201ENST00000444494 332 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC4P09017 RPL37P3-201ENST00000456825 293 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC4P09017 NPM1P17-201ENST00000479221 602 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 RPL32P34-201ENST00000486380 400 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC4P09017 AL358832.1-201ENST00000497800 389 ntBASIC3.46□□□□□ -1.86
HOXC4P09017 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXC4P09017 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXC4P09017 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms