Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 FSCN1P1-201ENST00000568912 1481 ntBASIC19.81■□□□□ 0.76
VPS28Q9UK41 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AL160286.2-201ENST00000567150 934 ntBASIC19.81■□□□□ 0.76
VPS28Q9UK41 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS28Q9UK41 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS28Q9UK41 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS28Q9UK41 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 UNC93B2-201ENST00000285383 730 ntBASIC19.8■□□□□ 0.76
VPS28Q9UK41 RBM17P1-201ENST00000453646 1190 ntBASIC19.8■□□□□ 0.76
VPS28Q9UK41 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS28Q9UK41 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS28Q9UK41 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS28Q9UK41 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS28Q9UK41 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS28Q9UK41 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 B3GAT3P1-201ENST00000471720 806 ntBASIC19.79■□□□□ 0.76
VPS28Q9UK41 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.79■□□□□ 0.76
VPS28Q9UK41 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS28Q9UK41 AC087289.5-201ENST00000586076 3175 ntBASIC19.79■□□□□ 0.76
VPS28Q9UK41 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS28Q9UK41 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 RCC2P6-201ENST00000526625 1557 ntBASIC19.78■□□□□ 0.76
VPS28Q9UK41 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 AC011506.1-201ENST00000474329 610 ntBASIC19.78■□□□□ 0.76
VPS28Q9UK41 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 AP000525.1-201ENST00000608286 694 ntBASIC19.78■□□□□ 0.76
VPS28Q9UK41 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS28Q9UK41 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS28Q9UK41 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms