Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLN6Q9NWW5 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLN6Q9NWW5 AC093525.10-201ENST00000625130 1569 ntBASIC17.58■□□□□ 0.41
CLN6Q9NWW5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 AC105020.6-201ENST00000621523 1217 ntBASIC17.58■□□□□ 0.4
CLN6Q9NWW5 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
CLN6Q9NWW5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 KRT18P11-201ENST00000435214 1283 ntBASIC17.57■□□□□ 0.4
CLN6Q9NWW5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.57■□□□□ 0.4
CLN6Q9NWW5 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 ZNRF2P3-201ENST00000424200 374 ntBASIC17.56■□□□□ 0.4
CLN6Q9NWW5 RARRES2P4-201ENST00000514074 484 ntBASIC17.56■□□□□ 0.4
CLN6Q9NWW5 AC023632.3-201ENST00000521633 145 ntBASIC17.56■□□□□ 0.4
CLN6Q9NWW5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 NTF6G-201ENST00000591094 616 ntBASIC17.56■□□□□ 0.4
CLN6Q9NWW5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLN6Q9NWW5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 KRT18P68-201ENST00000392293 1000 ntBASIC17.55■□□□□ 0.4
CLN6Q9NWW5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.55■□□□□ 0.4
CLN6Q9NWW5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms