Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 FAM220CP-201ENST00000395253 831 ntBASIC32.02■■■□□ 2.72
IFT140Q96RY7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 AC074051.2-201ENST00000565115 352 ntBASIC32.02■■■□□ 2.72
IFT140Q96RY7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 TK1-205ENST00000590862 642 ntTSL 3 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC32.01■■■□□ 2.72
IFT140Q96RY7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
IFT140Q96RY7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
IFT140Q96RY7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
IFT140Q96RY7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
IFT140Q96RY7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.71
IFT140Q96RY7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
IFT140Q96RY7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC32.01■■■□□ 2.71
IFT140Q96RY7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC32■■■□□ 2.71
IFT140Q96RY7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
IFT140Q96RY7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC32■■■□□ 2.71
IFT140Q96RY7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC32■■■□□ 2.71
IFT140Q96RY7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC32■■■□□ 2.71
IFT140Q96RY7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC32■■■□□ 2.71
IFT140Q96RY7 AP001005.1-201ENST00000571755 1248 ntBASIC32■■■□□ 2.71
IFT140Q96RY7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
IFT140Q96RY7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC31.99■■■□□ 2.71
IFT140Q96RY7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
IFT140Q96RY7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
IFT140Q96RY7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC31.98■■■□□ 2.71
IFT140Q96RY7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
IFT140Q96RY7 KRT18P58-201ENST00000527480 1120 ntBASIC31.98■■■□□ 2.71
IFT140Q96RY7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC31.98■■■□□ 2.71
IFT140Q96RY7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC31.98■■■□□ 2.71
IFT140Q96RY7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC31.98■■■□□ 2.71
IFT140Q96RY7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC31.98■■■□□ 2.71
IFT140Q96RY7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
IFT140Q96RY7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 MIR3917-201ENST00000580971 93 ntBASIC31.97■■■□□ 2.71
IFT140Q96RY7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 AC233702.3-201ENST00000578656 1387 ntBASIC31.97■■■□□ 2.71
IFT140Q96RY7 LINC00167-201ENST00000530583 1419 ntBASIC31.97■■■□□ 2.71
IFT140Q96RY7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
IFT140Q96RY7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
IFT140Q96RY7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 AC007225.1-201ENST00000566331 1836 ntBASIC31.96■■■□□ 2.71
IFT140Q96RY7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC31.96■■■□□ 2.71
IFT140Q96RY7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
IFT140Q96RY7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC31.96■■■□□ 2.71
IFT140Q96RY7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC31.96■■■□□ 2.71
IFT140Q96RY7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC31.96■■■□□ 2.71
IFT140Q96RY7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC31.96■■■□□ 2.71
IFT140Q96RY7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms