Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VPS13AQ96RL7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 AC034232.1-201ENST00000506026 1064 ntBASIC19.08■□□□□ 0.65
VPS13AQ96RL7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.08■□□□□ 0.65
VPS13AQ96RL7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 AC055717.3-201ENST00000622967 595 ntBASIC19.08■□□□□ 0.64
VPS13AQ96RL7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS13AQ96RL7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 DRAXINP1-201ENST00000437611 948 ntBASIC19.07■□□□□ 0.64
VPS13AQ96RL7 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 BX842568.4-201ENST00000421222 227 ntBASIC19.07■□□□□ 0.64
VPS13AQ96RL7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 AC092667.1-201ENST00000434301 2586 ntBASIC19.07■□□□□ 0.64
VPS13AQ96RL7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS13AQ96RL7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 AC036111.1-201ENST00000533973 1582 ntBASIC19.06■□□□□ 0.64
VPS13AQ96RL7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS13AQ96RL7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AP000867.3-201ENST00000524675 377 ntBASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VPS13AQ96RL7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms