Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.8■■□□□ 1.08
USP11P51784 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.8■■□□□ 1.08
USP11P51784 TSPY21P-201ENST00000433481 731 ntBASIC21.8■■□□□ 1.08
USP11P51784 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.8■■□□□ 1.08
USP11P51784 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.8■■□□□ 1.08
USP11P51784 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
USP11P51784 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP11P51784 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USP11P51784 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP11P51784 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
USP11P51784 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
USP11P51784 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.8■■□□□ 1.08
USP11P51784 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.8■■□□□ 1.08
USP11P51784 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
USP11P51784 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.79■■□□□ 1.08
USP11P51784 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
USP11P51784 AC096733.2-201ENST00000609937 1394 ntBASIC21.79■■□□□ 1.08
USP11P51784 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.79■■□□□ 1.08
USP11P51784 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 AC097488.1-201ENST00000507834 756 ntBASIC21.79■■□□□ 1.08
USP11P51784 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.79■■□□□ 1.08
USP11P51784 FITM1-202ENST00000559294 800 ntBASIC21.79■■□□□ 1.08
USP11P51784 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.79■■□□□ 1.08
USP11P51784 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.79■■□□□ 1.08
USP11P51784 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP11P51784 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.79■■□□□ 1.08
USP11P51784 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
USP11P51784 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 BX088651.1-201ENST00000540551 451 ntBASIC21.78■■□□□ 1.08
USP11P51784 AP005242.2-201ENST00000580065 1175 ntBASIC21.78■■□□□ 1.08
USP11P51784 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.78■■□□□ 1.08
USP11P51784 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.78■■□□□ 1.08
USP11P51784 AP000525.1-201ENST00000608286 694 ntBASIC21.78■■□□□ 1.08
USP11P51784 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.78■■□□□ 1.08
USP11P51784 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.78■■□□□ 1.08
USP11P51784 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 KRT8P11-201ENST00000409686 1436 ntBASIC21.78■■□□□ 1.08
USP11P51784 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.78■■□□□ 1.08
USP11P51784 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
USP11P51784 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP11P51784 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.77■■□□□ 1.08
USP11P51784 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USP11P51784 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.77■■□□□ 1.08
USP11P51784 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.77■■□□□ 1.08
USP11P51784 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
USP11P51784 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USP11P51784 PRSS44-201ENST00000515154 1146 ntBASIC21.77■■□□□ 1.08
USP11P51784 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USP11P51784 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP11P51784 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
USP11P51784 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.07
USP11P51784 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.77■■□□□ 1.07
USP11P51784 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
USP11P51784 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
USP11P51784 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.76■■□□□ 1.07
USP11P51784 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USP11P51784 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
USP11P51784 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.76■■□□□ 1.07
USP11P51784 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.76■■□□□ 1.07
USP11P51784 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.76■■□□□ 1.07
USP11P51784 CKBP1-201ENST00000565489 1086 ntBASIC21.76■■□□□ 1.07
USP11P51784 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.76■■□□□ 1.07
USP11P51784 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.76■■□□□ 1.07
USP11P51784 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.76■■□□□ 1.07
USP11P51784 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.76■■□□□ 1.07
USP11P51784 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP11P51784 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms