Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 AC036111.1-201ENST00000533973 1582 ntBASIC21.73■■□□□ 1.07
HTTP42858 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 AL049796.1-201ENST00000565336 1766 ntBASIC21.73■■□□□ 1.07
HTTP42858 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.73■■□□□ 1.07
HTTP42858 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC21.73■■□□□ 1.07
HTTP42858 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HTTP42858 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.73■■□□□ 1.07
HTTP42858 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.73■■□□□ 1.07
HTTP42858 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.72■■□□□ 1.07
HTTP42858 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.72■■□□□ 1.07
HTTP42858 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.72■■□□□ 1.07
HTTP42858 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HTTP42858 FAM220CP-201ENST00000395253 831 ntBASIC21.72■■□□□ 1.07
HTTP42858 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.72■■□□□ 1.07
HTTP42858 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.72■■□□□ 1.07
HTTP42858 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.72■■□□□ 1.07
HTTP42858 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.71■■□□□ 1.07
HTTP42858 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.71■■□□□ 1.07
HTTP42858 REXO1L6P-202ENST00000619970 1078 ntBASIC21.71■■□□□ 1.07
HTTP42858 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.71■■□□□ 1.07
HTTP42858 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.71■■□□□ 1.07
HTTP42858 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.71■■□□□ 1.07
HTTP42858 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
HTTP42858 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 SAPCD2P3-201ENST00000455031 850 ntBASIC21.71■■□□□ 1.07
HTTP42858 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.71■■□□□ 1.07
HTTP42858 AC243591.1-201ENST00000452967 1364 ntBASIC21.71■■□□□ 1.07
HTTP42858 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HTTP42858 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.71■■□□□ 1.07
HTTP42858 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.71■■□□□ 1.07
HTTP42858 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HTTP42858 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.07
HTTP42858 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.7■■□□□ 1.06
HTTP42858 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
HTTP42858 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 TOB2P1-201ENST00000469761 992 ntBASIC21.7■■□□□ 1.06
HTTP42858 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.7■■□□□ 1.06
HTTP42858 KRT8P26-201ENST00000534154 1276 ntBASIC21.7■■□□□ 1.06
HTTP42858 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.7■■□□□ 1.06
HTTP42858 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
HTTP42858 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.7■■□□□ 1.06
HTTP42858 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HTTP42858 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.7■■□□□ 1.06
HTTP42858 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.69■■□□□ 1.06
HTTP42858 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
HTTP42858 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.69■■□□□ 1.06
HTTP42858 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.69■■□□□ 1.06
HTTP42858 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
HTTP42858 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 MIR1233-2-201ENST00000408138 82 ntBASIC21.69■■□□□ 1.06
HTTP42858 MIR1233-1-201ENST00000408722 82 ntBASIC21.69■■□□□ 1.06
HTTP42858 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.69■■□□□ 1.06
HTTP42858 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
HTTP42858 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.69■■□□□ 1.06
HTTP42858 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HTTP42858 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms