Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGA1P17096 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HMGA1P17096 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGA1P17096 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGA1P17096 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HMGA1P17096 YBX1P2-201ENST00000489612 999 ntBASIC20.02■□□□□ 0.8
HMGA1P17096 AC022616.7-201ENST00000525383 220 ntBASIC20.02■□□□□ 0.8
HMGA1P17096 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGA1P17096 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGA1P17096 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGA1P17096 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGA1P17096 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
HMGA1P17096 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGA1P17096 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HMGA1P17096 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGA1P17096 RNF152P1-201ENST00000397754 604 ntBASIC20.01■□□□□ 0.79
HMGA1P17096 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGA1P17096 COX11P1-201ENST00000489116 835 ntBASIC20.01■□□□□ 0.79
HMGA1P17096 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGA1P17096 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGA1P17096 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
HMGA1P17096 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 AC125437.2-201ENST00000625180 2167 ntBASIC20.01■□□□□ 0.79
HMGA1P17096 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 KRT8P45-201ENST00000414328 1447 ntBASIC20.01■□□□□ 0.79
HMGA1P17096 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGA1P17096 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGA1P17096 TREX1-205ENST00000625293 1783 ntBASIC20■□□□□ 0.79
HMGA1P17096 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20■□□□□ 0.79
HMGA1P17096 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20■□□□□ 0.79
HMGA1P17096 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
HMGA1P17096 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 AC011558.1-201ENST00000623459 338 ntBASIC20■□□□□ 0.79
HMGA1P17096 TBC1D3P2-202ENST00000577902 1649 ntBASIC20■□□□□ 0.79
HMGA1P17096 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20■□□□□ 0.79
HMGA1P17096 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 PWWP2AP1-201ENST00000429776 2273 ntBASIC20■□□□□ 0.79
HMGA1P17096 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20■□□□□ 0.79
HMGA1P17096 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20■□□□□ 0.79
HMGA1P17096 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGA1P17096 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20■□□□□ 0.79
HMGA1P17096 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGA1P17096 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGA1P17096 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HMGA1P17096 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGA1P17096 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGA1P17096 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGA1P17096 FAM8A6P-201ENST00000407496 1135 ntBASIC19.99■□□□□ 0.79
HMGA1P17096 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HMGA1P17096 TSPY21P-201ENST00000433481 731 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms