Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00265-3P-201ENST00000447588 903 ntBASIC19.99■□□□□ 0.79
VCANP13611 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.99■□□□□ 0.79
VCANP13611 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.98■□□□□ 0.79
VCANP13611 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.98■□□□□ 0.79
VCANP13611 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.98■□□□□ 0.79
VCANP13611 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.98■□□□□ 0.79
VCANP13611 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.98■□□□□ 0.79
VCANP13611 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
VCANP13611 UPF3AP3-201ENST00000420996 769 ntBASIC19.98■□□□□ 0.79
VCANP13611 HLA-F-220ENST00000434407 884 ntBASIC19.98■□□□□ 0.79
VCANP13611 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.98■□□□□ 0.79
VCANP13611 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.98■□□□□ 0.79
VCANP13611 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.98■□□□□ 0.79
VCANP13611 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VCANP13611 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 TSPY22P-201ENST00000427496 604 ntBASIC19.98■□□□□ 0.79
VCANP13611 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.98■□□□□ 0.79
VCANP13611 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCANP13611 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 AC009065.1-201ENST00000564055 1225 ntBASIC19.97■□□□□ 0.79
VCANP13611 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.97■□□□□ 0.79
VCANP13611 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VCANP13611 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VCANP13611 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VCANP13611 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.97■□□□□ 0.79
VCANP13611 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.97■□□□□ 0.79
VCANP13611 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.97■□□□□ 0.79
VCANP13611 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.97■□□□□ 0.79
VCANP13611 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCANP13611 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
VCANP13611 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
VCANP13611 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.96■□□□□ 0.79
VCANP13611 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.96■□□□□ 0.79
VCANP13611 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.96■□□□□ 0.79
VCANP13611 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VCANP13611 MIR7706-201ENST00000613747 67 ntBASIC19.96■□□□□ 0.79
VCANP13611 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCANP13611 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.96■□□□□ 0.79
VCANP13611 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.95■□□□□ 0.78
VCANP13611 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 AC034232.1-201ENST00000506026 1064 ntBASIC19.95■□□□□ 0.78
VCANP13611 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 TP73-AS1-207ENST00000624167 988 ntBASIC19.95■□□□□ 0.78
VCANP13611 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.95■□□□□ 0.78
VCANP13611 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.95■□□□□ 0.78
VCANP13611 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
VCANP13611 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.95■□□□□ 0.78
VCANP13611 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.95■□□□□ 0.78
VCANP13611 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.95■□□□□ 0.78
VCANP13611 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VCANP13611 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.94■□□□□ 0.78
VCANP13611 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
VCANP13611 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VCANP13611 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms