Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CBX4O00257 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.72■□□□□ 0.75
CBX4O00257 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.72■□□□□ 0.75
CBX4O00257 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.72■□□□□ 0.75
CBX4O00257 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CBX4O00257 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.71■□□□□ 0.75
CBX4O00257 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 UNC93B2-201ENST00000285383 730 ntBASIC19.71■□□□□ 0.75
CBX4O00257 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CBX4O00257 RCN1P1-201ENST00000400413 996 ntBASIC19.71■□□□□ 0.75
CBX4O00257 MESTP1-201ENST00000404287 994 ntBASIC19.71■□□□□ 0.75
CBX4O00257 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.71■□□□□ 0.75
CBX4O00257 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 RBM17P1-201ENST00000453646 1190 ntBASIC19.71■□□□□ 0.75
CBX4O00257 Z85996.1-201ENST00000494644 937 ntBASIC19.71■□□□□ 0.75
CBX4O00257 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.71■□□□□ 0.75
CBX4O00257 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.71■□□□□ 0.75
CBX4O00257 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.71■□□□□ 0.75
CBX4O00257 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CBX4O00257 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CBX4O00257 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CBX4O00257 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 AC104417.2-201ENST00000562989 1793 ntBASIC19.7■□□□□ 0.74
CBX4O00257 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 AC004951.3-201ENST00000418645 1148 ntBASIC19.7■□□□□ 0.74
CBX4O00257 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.7■□□□□ 0.74
CBX4O00257 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CBX4O00257 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.7■□□□□ 0.74
CBX4O00257 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 AC011298.2-201ENST00000617989 482 ntBASIC19.7■□□□□ 0.74
CBX4O00257 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.7■□□□□ 0.74
CBX4O00257 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CBX4O00257 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.69■□□□□ 0.74
CBX4O00257 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.69■□□□□ 0.74
CBX4O00257 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CBX4O00257 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.69■□□□□ 0.74
CBX4O00257 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.69■□□□□ 0.74
CBX4O00257 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.69■□□□□ 0.74
CBX4O00257 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.69■□□□□ 0.74
CBX4O00257 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CBX4O00257 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.69■□□□□ 0.74
CBX4O00257 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CBX4O00257 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.69■□□□□ 0.74
CBX4O00257 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CBX4O00257 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CBX4O00257 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.69■□□□□ 0.74
CBX4O00257 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CBX4O00257 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.68■□□□□ 0.74
CBX4O00257 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CBX4O00257 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.68■□□□□ 0.74
CBX4O00257 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms