Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORA3.4-201ENST00000515969 96 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 CYCSP28-201ENST00000534284 321 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC124068.1-201ENST00000563131 678 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 SRGNP1-201ENST00000603392 451 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC068313.1-201ENST00000604028 1008 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC091946.2-201ENST00000606105 291 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC092954.1-201ENST00000609121 445 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC099669.2-201ENST00000616549 437 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC121761.2-201ENST00000617300 689 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC079416.3-201ENST00000624479 549 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC027290.2-201ENST00000623210 18662 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AL139811.1-201ENST00000424779 2299 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC107982.1-201ENST00000507171 1300 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RNU1-132P-201ENST00000364300 164 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RNU6-441P-201ENST00000384545 106 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 Z98745.1-201ENST00000402553 494 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AL080315.1-201ENST00000406055 466 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RNU2-42P-201ENST00000410697 113 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 MTCO3P1-205ENST00000422088 832 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AL139421.1-201ENST00000423010 169 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RPL7P34-201ENST00000433316 712 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ATP5F1P1-201ENST00000433775 569 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC087879.1-201ENST00000474343 374 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 VN1R105P-201ENST00000486595 910 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC025164.1-201ENST00000496249 478 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 SNX5P1-201ENST00000505757 1041 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC104090.1-201ENST00000506341 1171 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC108064.1-201ENST00000513791 460 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 SNORA70.24-201ENST00000517233 118 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 DUXAP6-201ENST00000553858 601 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 DUXAP1-201ENST00000556632 463 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 TRAV15-201ENST00000556680 249 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 SULT1C2P1-202ENST00000562418 459 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC138915.2-201ENST00000569776 97 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AL450489.1-201ENST00000612071 468 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC084757.4-201ENST00000616350 526 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AP003485.2-201ENST00000623636 610 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC098679.5-201ENST00000624394 571 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC019226.2-201ENST00000625973 424 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC087190.4-201ENST00000574616 8334 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 AC117529.2-201ENST00000512159 2068 ntBASIC4.29□□□□□ -1.72
COL28A1Q2UY09 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL28A1Q2UY09 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 VDAC1P9-201ENST00000412766 841 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 MTND4P22-201ENST00000413116 1169 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL445584.1-201ENST00000431451 330 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL133547.1-201ENST00000448546 220 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 VN1R40P-201ENST00000455196 941 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC090142.1-201ENST00000465776 462 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms