Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 HSPA8P1-201ENST00000425843 1833 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A4P53420 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A4P53420 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A4P53420 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 SNORA7.4-201ENST00000384249 137 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 SNORD67-201ENST00000390833 111 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AL078595.1-201ENST00000404458 226 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A4P53420 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A4P53420 AC127526.1-201ENST00000417526 366 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC092447.3-201ENST00000426027 686 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 ETF1P3-201ENST00000430422 1160 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 BX679664.1-201ENST00000434429 253 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC133473.1-201ENST00000455173 299 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC010401.1-201ENST00000463867 348 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.46□□□□□ -1.85
COL4A4P53420 AC021146.1-201ENST00000511202 716 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
COL4A4P53420 EIF1AXP2-201ENST00000555940 413 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.46□□□□□ -1.85
COL4A4P53420 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.46□□□□□ -1.85
COL4A4P53420 AL109659.3-201ENST00000624985 950 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 HPVC1-201ENST00000629899 1198 ntBASIC3.46□□□□□ -1.85
COL4A4P53420 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.46□□□□□ -1.86
COL4A4P53420 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.46□□□□□ -1.86
COL4A4P53420 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL4A4P53420 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC006504.1-201ENST00000562493 3666 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 RPS4XP5-202ENST00000449995 1334 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 MFSD8-213ENST00000641134 1327 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A4P53420 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL4A4P53420 AC011242.1-201ENST00000433596 1158 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AP000936.3-201ENST00000438127 255 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC008264.1-201ENST00000447612 367 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC140076.1-201ENST00000449897 361 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 RPL12P26-201ENST00000452430 487 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 S100A11P1-201ENST00000477525 312 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A4P53420 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC093755.1-201ENST00000512950 1023 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC090281.1-201ENST00000523019 276 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC007336.1-201ENST00000576365 3828 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 MIR4319-201ENST00000577285 85 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 ZNF92P2-201ENST00000600543 1059 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AC096947.1-201ENST00000603233 470 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AL713998.2-201ENST00000604538 1198 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC018754.1-201ENST00000607486 925 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
COL4A4P53420 AC120349.3-201ENST00000624377 529 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 RIOK3P1-201ENST00000418778 1528 ntBASIC3.46□□□□□ -1.86
COL4A4P53420 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
COL4A4P53420 AL672296.1-201ENST00000427780 2158 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A4P53420 MTCO1P4-201ENST00000520516 1409 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL4A4P53420 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A4P53420 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A4P53420 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
COL4A4P53420 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.45□□□□□ -1.86
COL4A4P53420 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL4A4P53420 RNU4-44P-201ENST00000363050 141 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL4A4P53420 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL4A4P53420 RN7SKP222-201ENST00000410651 315 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 NUP35P1-201ENST00000422734 947 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 MTCO2P17-201ENST00000424336 677 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 SETP5-201ENST00000437270 562 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A4P53420 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A4P53420 HMGB1P5-202ENST00000451497 985 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 CCDC75P1-201ENST00000469247 791 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms