Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 HMGB3P30-201ENST00000457863 606 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AL133162.1-201ENST00000463228 453 ntBASIC3.77□□□□□ -1.81
SDC3O75056 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 AC093755.1-201ENST00000512950 1023 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 AC091515.1-201ENST00000548110 679 ntBASIC3.77□□□□□ -1.81
SDC3O75056 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.77□□□□□ -1.81
SDC3O75056 AC011611.5-201ENST00000552477 578 ntBASIC3.77□□□□□ -1.81
SDC3O75056 RN7SL339P-201ENST00000580597 296 ntBASIC3.77□□□□□ -1.81
SDC3O75056 MIR3922-201ENST00000585192 84 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.77□□□□□ -1.81
SDC3O75056 VN1R79P-201ENST00000593540 513 ntBASIC3.77□□□□□ -1.81
SDC3O75056 VN1R88P-201ENST00000596787 292 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AP002906.1-201ENST00000603405 233 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AC007179.3-201ENST00000604976 235 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AC112503.1-201ENST00000608436 391 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.77□□□□□ -1.81
SDC3O75056 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AC078880.5-201ENST00000617845 421 ntBASIC3.77□□□□□ -1.81
SDC3O75056 AL109659.3-201ENST00000624985 950 ntBASIC3.77□□□□□ -1.81
SDC3O75056 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SDC3O75056 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SDC3O75056 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SDC3O75056 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
SDC3O75056 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
SDC3O75056 MTND4P8-201ENST00000514997 1362 ntBASIC3.76□□□□□ -1.81
SDC3O75056 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SDC3O75056 MTCO1P12-201ENST00000414273 1543 ntBASIC3.76□□□□□ -1.81
SDC3O75056 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
SDC3O75056 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.76□□□□□ -1.81
SDC3O75056 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SDC3O75056 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SDC3O75056 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SDC3O75056 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SDC3O75056 RNU6-207P-201ENST00000384137 107 ntBASIC3.76□□□□□ -1.81
SDC3O75056 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SDC3O75056 SNORD65C-201ENST00000390962 71 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RNU6-932P-201ENST00000391108 106 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.76□□□□□ -1.81
SDC3O75056 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.76□□□□□ -1.81
SDC3O75056 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.76□□□□□ -1.81
SDC3O75056 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.76□□□□□ -1.81
SDC3O75056 VN1R25P-201ENST00000443385 738 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RPS26P30-201ENST00000443431 335 ntBASIC3.76□□□□□ -1.81
SDC3O75056 MTND1P33-201ENST00000446251 917 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RPL29P29-201ENST00000448725 423 ntBASIC3.76□□□□□ -1.81
SDC3O75056 VN1R40P-201ENST00000455196 941 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RPS20P32-201ENST00000456044 356 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.76□□□□□ -1.81
SDC3O75056 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.76□□□□□ -1.81
SDC3O75056 RPS17P11-201ENST00000474297 293 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RPS4XP6-201ENST00000477670 797 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AC112198.4-201ENST00000515450 351 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.76□□□□□ -1.81
SDC3O75056 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.76□□□□□ -1.81
SDC3O75056 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 MIR4504-201ENST00000577413 92 ntBASIC3.76□□□□□ -1.81
SDC3O75056 RNA5SP108-201ENST00000605921 117 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 AL159169.3-201ENST00000608871 561 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 AL773545.4-201ENST00000637262 310 ntBASIC3.76□□□□□ -1.81
SDC3O75056 AL513478.4-201ENST00000641636 310 ntBASIC3.76□□□□□ -1.81
SDC3O75056 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SDC3O75056 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
SDC3O75056 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
SDC3O75056 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 AC073055.1-201ENST00000456901 1621 ntBASIC3.75□□□□□ -1.81
SDC3O75056 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 XIAPP3-201ENST00000312918 795 ntBASIC3.75□□□□□ -1.81
SDC3O75056 RNA5SP322-201ENST00000363617 119 ntBASIC3.75□□□□□ -1.81
SDC3O75056 RNU1-89P-201ENST00000384592 164 ntBASIC3.75□□□□□ -1.81
SDC3O75056 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
SDC3O75056 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.75□□□□□ -1.81
SDC3O75056 DSTNP4-201ENST00000399472 474 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC241520.1-201ENST00000422654 1099 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AL513175.1-201ENST00000431492 780 ntBASIC3.75□□□□□ -1.81
SDC3O75056 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 CYCSP43-201ENST00000438233 310 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC083863.1-201ENST00000438811 231 ntBASIC3.75□□□□□ -1.81
SDC3O75056 RPL23AP33-201ENST00000442301 452 ntBASIC3.75□□□□□ -1.81
SDC3O75056 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.75□□□□□ -1.81
SDC3O75056 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.75□□□□□ -1.81
SDC3O75056 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 AC146507.1-201ENST00000468335 354 ntBASIC3.75□□□□□ -1.81
SDC3O75056 RN7SL585P-201ENST00000470538 280 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC015724.1-201ENST00000478577 156 ntBASIC3.75□□□□□ -1.81
SDC3O75056 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.75□□□□□ -1.81
SDC3O75056 RN7SL271P-201ENST00000487601 295 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.75□□□□□ -1.81
SDC3O75056 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms