Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC090116.1-201ENST00000615679 446 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AL158163.2-201ENST00000619110 700 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR11H5P-202ENST00000641612 1325 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 FAM91A3P-201ENST00000456826 2544 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 MTND4P10-201ENST00000446199 1363 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 ZNF37BP-203ENST00000452306 1352 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 MAPK10-253ENST00000641010 4072 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 SNORA70C-201ENST00000384538 135 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 RNA5SP39-201ENST00000411245 120 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 NANOGP6-201ENST00000429190 847 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 ELOCP8-201ENST00000439309 332 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 EEF1A1P39-201ENST00000440791 250 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 ELOCP15-201ENST00000442090 332 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 HMGN2P21-201ENST00000447764 270 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL589880.1-201ENST00000448271 287 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AP000873.1-201ENST00000463987 400 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 OR5H5P-201ENST00000503164 928 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 HNRNPKP5-201ENST00000515300 253 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 RNA5SP73-201ENST00000516744 108 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AP003385.6-201ENST00000531603 374 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC006064.5-201ENST00000541782 248 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC090502.2-201ENST00000549267 280 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL109766.1-201ENST00000555080 552 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC107954.1-201ENST00000565906 727 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC138915.2-201ENST00000569776 97 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC090616.5-202ENST00000582111 297 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL161729.3-201ENST00000603533 673 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL035411.2-201ENST00000604022 421 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 IGHV3-29-201ENST00000604817 344 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 HMGN2P28-201ENST00000606102 262 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC005332.6-201ENST00000613178 446 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC023158.2-201ENST00000614876 543 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 LARP1BP1-201ENST00000506036 1359 ntBASIC4.36□□□□□ -1.71
VPS28Q9UK41 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
VPS28Q9UK41 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS28Q9UK41 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS28Q9UK41 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS28Q9UK41 RNU6-339P-201ENST00000384310 107 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 SNORD66.1-201ENST00000391230 76 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 RPS26P8-201ENST00000393490 348 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 EIF5P1-201ENST00000400019 1231 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL136310.1-201ENST00000404926 654 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL035410.1-201ENST00000427409 427 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 COX6B1P7-201ENST00000430845 235 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 BTF3P10-201ENST00000433415 495 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL645638.1-201ENST00000440519 361 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 RRM2P4-201ENST00000441721 562 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL451050.1-201ENST00000450126 415 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC022034.3-201ENST00000471393 478 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC068587.1-201ENST00000483613 781 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 MTCO3P44-201ENST00000510977 541 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms