Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
TREX1Q9NSU2 AC007256.1-201ENST00000392253 2765 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RPL21P110-201ENST00000433345 446 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 NEK4P1-201ENST00000433383 879 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC006994.1-201ENST00000438212 839 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RPL21P23-201ENST00000446654 460 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC008264.1-201ENST00000447612 367 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 HMGB1P5-202ENST00000451497 985 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RN7SL542P-201ENST00000467147 294 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 CYCSP20-201ENST00000473154 315 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RNU6-1231P-201ENST00000517185 103 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RNU4-60P-201ENST00000517239 135 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 HMGB1P46-201ENST00000520062 610 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 MTND4LP24-201ENST00000572277 291 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC090425.2-201ENST00000608818 501 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 AC127502.3-201ENST00000636170 1206 ntBASIC3.41□□□□□ -1.86
TREX1Q9NSU2 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TREX1Q9NSU2 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
TREX1Q9NSU2 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
TREX1Q9NSU2 AC017071.1-201ENST00000564407 2204 ntBASIC3.4□□□□□ -1.86
TREX1Q9NSU2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
TREX1Q9NSU2 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
TREX1Q9NSU2 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
TREX1Q9NSU2 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 SNORA73.2-201ENST00000364946 201 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 RNU4-31P-201ENST00000384211 141 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL590290.1-201ENST00000405336 380 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC126124.2-201ENST00000413542 321 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 RFESDP1-201ENST00000422350 461 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL049610.1-201ENST00000423374 372 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL445528.1-201ENST00000426330 420 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC092641.1-201ENST00000440229 772 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 NPM1P49-201ENST00000448027 714 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC087312.1-201ENST00000471411 480 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC020898.1-201ENST00000474167 787 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC025518.1-201ENST00000479856 347 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC112198.1-201ENST00000505369 1220 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC093755.1-201ENST00000512950 1023 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 IGKV2-26-201ENST00000518305 343 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC026403.1-201ENST00000518938 295 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC005476.1-201ENST00000554427 397 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 MIR3186-201ENST00000577404 85 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 ZNF92P3-201ENST00000596594 954 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC006557.5-201ENST00000603126 811 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 MTCO3P22-201ENST00000603219 784 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC110792.4-201ENST00000609843 298 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 CR392039.5-201ENST00000623201 510 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AC243312.2-201ENST00000623340 601 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 AL034408.1-202ENST00000636088 415 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 PWAR6-201ENST00000552334 4618 ntBASIC3.4□□□□□ -1.87
TREX1Q9NSU2 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.4□□□□□ -1.87
TREX1Q9NSU2 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
TREX1Q9NSU2 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.39□□□□□ -1.87
TREX1Q9NSU2 RNU4-35P-201ENST00000362588 141 ntBASIC3.39□□□□□ -1.87
TREX1Q9NSU2 RNA5SP197-201ENST00000363357 119 ntBASIC3.39□□□□□ -1.87
TREX1Q9NSU2 Y_RNA.126-201ENST00000363382 111 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms